Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | GBS85147_RS08180 | Genome accession | NZ_CP010319 |
| Coordinates | 1631002..1631493 (-) | Length | 163 a.a. |
| NCBI ID | WP_000609584.1 | Uniprot ID | - |
| Organism | Streptococcus agalactiae strain GBS85147 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1626002..1636493
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GBS85147_RS08165 (GBS85147_1656) | - | 1628908..1629579 (-) | 672 | WP_000174846.1 | DUF1129 domain-containing protein | - |
| GBS85147_RS08170 (GBS85147_1657) | - | 1629604..1630548 (-) | 945 | WP_000812124.1 | magnesium transporter CorA family protein | - |
| GBS85147_RS08175 (GBS85147_1658) | rpsR | 1630718..1630957 (-) | 240 | WP_000068665.1 | 30S ribosomal protein S18 | - |
| GBS85147_RS08180 (GBS85147_1659) | ssbA | 1631002..1631493 (-) | 492 | WP_000609584.1 | single-stranded DNA-binding protein | Machinery gene |
| GBS85147_RS08185 (GBS85147_1660) | rpsF | 1631505..1631792 (-) | 288 | WP_001151773.1 | 30S ribosomal protein S6 | - |
| GBS85147_RS08190 (GBS85147_1661) | mutY | 1632856..1634010 (+) | 1155 | WP_161508544.1 | A/G-specific adenine glycosylase | - |
| GBS85147_RS08195 (GBS85147_1662) | - | 1634187..1634780 (+) | 594 | WP_000402388.1 | helix-turn-helix domain-containing protein | - |
| GBS85147_RS08200 (GBS85147_1663) | trxA | 1634826..1635158 (-) | 333 | WP_001932060.1 | thioredoxin | - |
| GBS85147_RS08205 (GBS85147_1664) | - | 1635221..1635721 (-) | 501 | WP_000446807.1 | phosphatase PAP2 family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18175.85 Da Isoelectric Point: 4.9119
>NTDB_id=136384 GBS85147_RS08180 WP_000609584.1 1631002..1631493(-) (ssbA) [Streptococcus agalactiae strain GBS85147]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSAPSQQTPNFSRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSAPSQQTPNFSRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=136384 GBS85147_RS08180 WP_000609584.1 1631002..1631493(-) (ssbA) [Streptococcus agalactiae strain GBS85147]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTC
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTC
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.714 |
100 |
0.62 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.064 |
100 |
0.62 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.963 |
66.871 |
0.374 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |