Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RP72_RS21975 Genome accession   NZ_CP010314
Coordinates   4178382..4178900 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4173382..4183900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP72_RS21945 (RP72_21945) yyaJ 4173885..4175240 (+) 1356 WP_003243011.1 MFS transporter -
  RP72_RS21950 (RP72_21950) maa 4175274..4175828 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  RP72_RS21955 (RP72_21955) yyaH 4175846..4176226 (-) 381 WP_003244460.1 VOC family protein -
  RP72_RS21960 (RP72_21960) ccpB 4176282..4177217 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  RP72_RS21965 (RP72_21965) xth 4177276..4178034 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  RP72_RS21970 (RP72_21970) rpsR 4178099..4178338 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  RP72_RS21975 (RP72_21975) ssbA 4178382..4178900 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  RP72_RS21980 (RP72_21980) rpsF 4178941..4179228 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  RP72_RS21985 (RP72_21985) ychF 4179339..4180439 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  RP72_RS21990 (RP72_21990) yyaE 4180566..4182569 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  RP72_RS21995 (RP72_21995) yyzM 4182620..4182826 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=136316 RP72_RS21975 WP_003219228.1 4178382..4178900(-) (ssbA) [Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=136316 RP72_RS21975 WP_003219228.1 4178382..4178900(-) (ssbA) [Bacillus subtilis subsp. subtilis strain 3NA isolate 1970 (Michel and Millet)]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment