Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FORC17_RS12520 Genome accession   NZ_CP012739
Coordinates   2700594..2701319 (+) Length   241 a.a.
NCBI ID   WP_011078574.1    Uniprot ID   A0A3Q0L243
Organism   Vibrio vulnificus strain FORC_017     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2695594..2706319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC17_RS12505 (FORC17_2439) clpC 2696069..2698642 (-) 2574 WP_039552781.1 ATP-dependent chaperone ClpB Regulator
  FORC17_RS12510 (FORC17_2440) pgeF 2698760..2699476 (-) 717 WP_173652403.1 peptidoglycan editing factor PgeF -
  FORC17_RS12515 (FORC17_2441) rluD 2699480..2700457 (-) 978 WP_039552777.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FORC17_RS12520 (FORC17_2442) comL 2700594..2701319 (+) 726 WP_011078574.1 outer membrane protein assembly factor BamD Machinery gene
  FORC17_RS12525 (FORC17_2443) hpf 2701672..2701995 (+) 324 WP_011078575.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FORC17_RS12530 (FORC17_2444) pheA 2702239..2703417 (+) 1179 WP_011078576.1 prephenate dehydratase -
  FORC17_RS12535 (FORC17_2445) yjjX 2703442..2703978 (+) 537 WP_039552773.1 inosine/xanthosine triphosphatase -
  FORC17_RS12540 (FORC17_2446) trpR 2704009..2704317 (-) 309 WP_011078578.1 trp operon repressor -
  FORC17_RS12545 (FORC17_2447) sltY 2704333..2706288 (-) 1956 WP_011078579.1 murein transglycosylase -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27786.57 Da        Isoelectric Point: 5.6928

>NTDB_id=136281 FORC17_RS12520 WP_011078574.1 2700594..2701319(+) (comL) [Vibrio vulnificus strain FORC_017]
MKHHTLAGLLAVSVLFGCSSSEQIVPDVPPAELYAEAQTSLQGGNWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRSDRDPEPVKQAFDDFKKLLERYPNSPYAED
SQKRMFALKNRLAEYDLATADYYLRREAWIAAINRSQELQKTYPDTIAARKSLKIQLEAYKQLGLQDAIARTEELIRLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=136281 FORC17_RS12520 WP_011078574.1 2700594..2701319(+) (comL) [Vibrio vulnificus strain FORC_017]
ATGAAACACCATACTTTAGCAGGCCTGCTCGCGGTATCAGTGTTGTTTGGCTGTTCAAGCAGTGAACAAATTGTGCCGGA
TGTGCCACCAGCAGAGCTGTATGCAGAAGCACAAACCTCTCTTCAAGGAGGAAACTGGCTCACAGCGATTGAGAAACTAG
AAGCGCTAGATTCCCGCTACCCTTTTGGTGCTTACTCAGAACAAGTACAACTTGATTTGATTTACGCCTATTACAAGAAC
GATGATTTGGCTTTGGGTCTGGCGACCATTTCGCGTTTTACGCGTTTAAATCCAACACACGAGAAAATGGACTGGGTGTT
GTACATGCGTGGTCTCACCCACATGGCACAAGATCGTAATTTCATGCACGACTTGTTTAACATTGATCGTAGCGATCGCG
ATCCTGAGCCAGTCAAACAAGCTTTTGATGATTTCAAAAAACTGCTTGAGCGCTATCCAAACAGCCCATATGCGGAAGAT
TCTCAAAAACGCATGTTTGCTCTTAAAAACCGTTTAGCAGAATATGATCTAGCAACCGCCGATTACTATCTGCGTCGTGA
AGCTTGGATTGCAGCCATCAATCGTTCTCAGGAGTTGCAGAAAACCTATCCAGATACCATCGCTGCGAGAAAATCACTCA
AAATCCAGCTTGAGGCGTATAAACAATTAGGTTTACAAGATGCCATCGCACGCACTGAAGAGTTGATACGTCTGAATCCG
CTCTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L243

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.585

0.394
  comL Neisseria gonorrhoeae MS11

39.167

99.585

0.39

Multiple sequence alignment