Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC17_RS14160 Genome accession   NZ_CP012739
Coordinates   3051942..3052616 (-) Length   224 a.a.
NCBI ID   WP_011078895.1    Uniprot ID   Q7MPS7
Organism   Vibrio vulnificus strain FORC_017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3046942..3057616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC17_RS14135 (FORC17_2765) - 3047396..3049372 (-) 1977 WP_045623825.1 LTA synthase family protein -
  FORC17_RS14140 (FORC17_2766) mutM 3049519..3050328 (-) 810 WP_013572550.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  FORC17_RS14145 (FORC17_2767) - 3050358..3050855 (-) 498 WP_045623824.1 hypothetical protein -
  FORC17_RS14150 (FORC17_2768) rpmG 3051208..3051378 (-) 171 WP_011078893.1 50S ribosomal protein L33 -
  FORC17_RS14155 (FORC17_2769) rpmB 3051394..3051630 (-) 237 WP_011078894.1 50S ribosomal protein L28 -
  FORC17_RS14160 (FORC17_2770) radC 3051942..3052616 (-) 675 WP_011078895.1 RadC family protein Machinery gene
  FORC17_RS14165 (FORC17_2771) - 3052730..3054397 (-) 1668 WP_013572551.1 methyl-accepting chemotaxis protein -
  FORC17_RS14170 (FORC17_2772) coaBC 3054694..3055899 (+) 1206 WP_013572552.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  FORC17_RS14175 (FORC17_2773) slmA 3056050..3056640 (+) 591 WP_011078898.1 nucleoid occlusion factor SlmA -
  FORC17_RS14180 (FORC17_2774) - 3056644..3057582 (+) 939 WP_065090782.1 Kdo(2)-lipid IV(A) acyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25340.02 Da        Isoelectric Point: 7.5165

>NTDB_id=136284 FORC17_RS14160 WP_011078895.1 3051942..3052616(-) (radC) [Vibrio vulnificus strain FORC_017]
MSLKNLPSESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVIELADFLLRDFGSLRKLFSADEQSFCRHKGLGQAKYV
QLQAVLEMTQRYLAETLQRGDALTSPQHTKLYLSSMLRDRHREAFYVLFLDNQNRVIKDEVMFEGTIDAASVYPREVVKR
ALHYNAAALILAHNHPSGVAEPSQADRRITRRLSDALGLVDIRVLDHFVVGDGEVVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=136284 FORC17_RS14160 WP_011078895.1 3051942..3052616(-) (radC) [Vibrio vulnificus strain FORC_017]
ATGAGCCTAAAAAACCTGCCTAGTGAATCCATGCCAAGAGAAAAGTTGCTTCAGCGAGGGCCTCAATCTTTGTCTGATGC
CGAGTTGCTTGCGATCTTTTTGCGAACAGGCACACAAGGAATGAACGTAATTGAACTTGCCGATTTTTTATTGCGAGACT
TTGGCTCGCTGAGAAAACTGTTTTCCGCCGATGAACAGAGCTTTTGCCGTCACAAAGGATTGGGGCAGGCAAAATACGTT
CAATTACAAGCTGTTTTGGAAATGACGCAACGTTATTTGGCCGAAACATTGCAACGTGGTGATGCGCTCACCAGTCCACA
GCACACTAAGCTTTATCTCTCTTCCATGCTGCGCGATCGCCATCGAGAAGCGTTTTATGTGTTGTTCCTCGATAATCAAA
ATCGTGTCATTAAAGATGAGGTGATGTTTGAAGGCACCATCGATGCCGCCTCAGTCTATCCTCGGGAAGTCGTTAAAAGA
GCCTTACACTATAATGCGGCAGCTTTAATATTGGCGCACAACCATCCCTCTGGAGTGGCAGAGCCAAGCCAAGCAGACCG
GCGAATTACTCGACGTTTGAGTGACGCATTGGGCTTAGTGGATATACGGGTATTGGACCACTTTGTGGTGGGCGATGGGG
AAGTGGTTTCCTTTGCGGAAAGAGGCTGGATTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(4-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MPS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.241

96.429

0.513
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.5

100

0.375

Multiple sequence alignment