Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   FORC17_RS11030 Genome accession   NZ_CP012739
Coordinates   2389902..2393306 (-) Length   1134 a.a.
NCBI ID   WP_065090652.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_017     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2384902..2398306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC17_RS11010 (FORC17_2157) - 2385849..2386277 (+) 429 WP_046029150.1 HIT family protein -
  FORC17_RS11015 (FORC17_2158) - 2386386..2386616 (-) 231 WP_011078264.1 FeoC-like transcriptional regulator -
  FORC17_RS11020 (FORC17_2159) feoB 2386613..2388889 (-) 2277 WP_065090651.1 Fe(2+) transporter permease subunit FeoB -
  FORC17_RS11025 - 2388889..2389116 (-) 228 WP_011149798.1 FeoA family protein -
  FORC17_RS11030 (FORC17_2161) tfoS 2389902..2393306 (-) 3405 WP_065090652.1 AraC family transcriptional regulator Regulator
  FORC17_RS11035 (FORC17_2162) znuA 2393478..2394353 (-) 876 WP_065090653.1 zinc ABC transporter substrate-binding protein ZnuA -
  FORC17_RS11040 (FORC17_2163) znuC 2394435..2395220 (+) 786 WP_065090654.1 zinc ABC transporter ATP-binding protein ZnuC -
  FORC17_RS11045 (FORC17_2164) znuB 2395213..2395998 (+) 786 WP_039553087.1 zinc ABC transporter permease subunit ZnuB -
  FORC17_RS11050 (FORC17_2165) sucD 2396081..2396953 (-) 873 WP_011149794.1 succinate--CoA ligase subunit alpha -
  FORC17_RS11055 (FORC17_2166) sucC 2396953..2398119 (-) 1167 WP_011078272.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1134 a.a.        Molecular weight: 126502.10 Da        Isoelectric Point: 5.3871

>NTDB_id=136276 FORC17_RS11030 WP_065090652.1 2389902..2393306(-) (tfoS) [Vibrio vulnificus strain FORC_017]
MLRILAWLLLAGLTLPFKALALDGNSAIFYPLPGQEQGTFVAAKNLFVGGDGGLWIHDVHGKVQYFDGNTLLPKRGSLLE
YPSEQVAFHQGSFWTFVANEVFQTYPNQKRQLAFSLNPGAEIRKIGSSDGHIWVSDGINFYDYDIESKELKTYSLLSLYQ
NNQSSYVYINDAKRVLSKWVLGTTSGAYLSQGEQFTHIKASAKHFVAKLYFSPTRRELLVGTLNGAALIDILKPTQKNIM
IGESHVLSMTETNQEYWIGTEHGLYSYSFLTGQVAKVKAAGAQDVSPDNRKIYALVNDEQGGIWVATNSGILYYSLFGRK
FERLNNITEEKASRFNGNITKIVYASDETIWFKDANNLYRAIGVNKQYSRVRLPIKVNDFALEDGNIWIASEQGLYIYDT
NQYKLRSFDLPSYLKGKEIDFVSVSPQGKVWISSGYRLAAIGVADGRFQDYGDRWIASQNLPARILGLEVDQKVPLIVRT
DHGAYVLENDKIRFERNTQSFGESVDIAEAKDGSLWFAGTHGIYRKDPTEKTLGELALPQENVKPICLITDASGIWMVSS
IGLSFYNFDGALRKHFGSRSGIMSNEFVEGSCAASFGEAQSGSVLVLGSKHGLVFADRDDLMVSKLPEPRVVISQVRIDD
QVANVGQKEWQLPELAYGSAISFGLGVMPNAYGETLYYRLNQEHWQTTEAGQVSFEHLAAGDYLLSVKTSLVAGDSVQVR
FTVLHPWYQTTMAMAIFVLLIVALGGLVVFWRSRYVSVQNRELTALVALKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
NVARSLRQSVDALLSKPSVEPASEYQEHQMRIAMLLEELKSSPSDGTDGYLQNFNVSHIIQSVVDVWEDELSKIGVQVHI
SSESDDYRVAVGQFNLDVIFNSVFASVLKRAYRGQMLDIVIREQNDFVEVSFIDFGQPFSTNTDAEDSAGVEPAKVDTAI
EKLPALVEQSGGRLSLFSSAERNKIEILWPKAVESLINDEEPSVFVDSVDPSPVTEVSSEGAPSPEQLWLAKVEAMVAEH
YTNPEFGTAMAAKMLYVSERSLQRRFKSASSRTFTDYLTEVRLEKACESLLAGEKVVDVAFASGFNDPSYFSQRFKLYFG
VPPSKFASDALESE

Nucleotide


Download         Length: 3405 bp        

>NTDB_id=136276 FORC17_RS11030 WP_065090652.1 2389902..2393306(-) (tfoS) [Vibrio vulnificus strain FORC_017]
TTGCTGCGTATTCTTGCCTGGCTTCTACTCGCTGGGCTTACACTACCGTTCAAAGCGCTAGCTTTGGACGGAAACTCTGC
CATATTTTACCCACTGCCTGGACAGGAGCAGGGAACCTTTGTTGCCGCTAAAAATCTCTTTGTTGGCGGTGATGGTGGTT
TATGGATTCACGACGTGCACGGCAAAGTGCAATATTTCGATGGCAATACCTTGTTGCCGAAACGTGGCAGCCTTCTAGAG
TATCCTTCCGAGCAAGTGGCCTTTCATCAAGGCAGTTTTTGGACTTTTGTCGCGAATGAAGTCTTCCAAACATACCCCAA
TCAGAAGCGTCAGTTAGCGTTCAGCTTAAATCCGGGGGCAGAAATCAGAAAAATTGGCAGCTCAGATGGCCACATTTGGG
TGAGTGATGGCATCAATTTTTATGACTACGATATTGAATCAAAAGAATTAAAAACCTATTCCTTACTCTCGTTGTATCAA
AACAATCAGAGTAGCTACGTCTACATCAATGATGCAAAGCGGGTTTTAAGCAAATGGGTACTCGGTACCACATCGGGAGC
TTACCTATCACAAGGTGAGCAATTTACCCATATCAAAGCGTCAGCGAAGCATTTCGTTGCCAAACTGTACTTTTCTCCGA
CTCGTCGTGAGTTACTGGTGGGGACGCTAAATGGCGCTGCGCTCATTGATATTTTAAAGCCGACTCAAAAAAACATCATG
ATTGGAGAGTCTCATGTGCTTTCGATGACAGAAACCAATCAAGAATATTGGATTGGCACGGAACATGGTCTGTACAGTTA
CTCGTTTTTGACTGGACAAGTGGCCAAAGTGAAAGCGGCAGGTGCGCAAGATGTCTCTCCTGATAATCGAAAAATTTACG
CGTTGGTGAATGATGAACAAGGGGGTATTTGGGTTGCGACGAACAGTGGCATTCTCTACTACTCTCTGTTTGGCCGAAAA
TTTGAACGTCTTAATAACATCACCGAAGAAAAAGCCAGCCGTTTTAATGGCAATATCACCAAAATTGTCTATGCATCAGA
TGAAACGATTTGGTTTAAAGATGCAAACAATCTTTACCGAGCCATTGGGGTTAATAAACAGTACAGCCGCGTGCGTTTGC
CGATAAAGGTGAATGACTTTGCACTTGAAGATGGCAACATCTGGATTGCTTCCGAGCAAGGTCTGTATATATACGACACG
AATCAGTACAAACTTCGATCGTTCGATTTACCAAGTTACCTTAAAGGTAAAGAGATTGATTTTGTTTCGGTCAGCCCTCA
AGGCAAGGTTTGGATAAGTTCGGGTTATCGATTAGCTGCCATTGGCGTTGCCGATGGGCGCTTCCAAGATTATGGCGATC
GGTGGATTGCCAGCCAAAATTTGCCCGCTCGAATTTTGGGTCTAGAAGTGGATCAAAAAGTCCCGTTAATCGTAAGAACC
GATCACGGGGCCTATGTGCTAGAAAACGACAAGATCCGTTTTGAGCGAAACACGCAGTCTTTTGGCGAAAGTGTCGATAT
TGCAGAAGCGAAAGATGGGTCGCTATGGTTTGCAGGGACTCACGGCATCTATCGTAAAGATCCCACAGAAAAAACGTTAG
GAGAGCTGGCACTTCCTCAGGAAAACGTGAAGCCTATTTGCCTAATCACCGATGCTAGTGGCATTTGGATGGTGAGTTCA
ATTGGCCTCAGTTTTTACAATTTTGACGGAGCACTGCGTAAGCACTTTGGGTCTCGCTCGGGCATTATGAGTAACGAGTT
CGTTGAAGGCTCATGTGCGGCTTCATTTGGAGAAGCGCAATCCGGCTCGGTGTTAGTACTGGGTTCAAAGCATGGCTTGG
TATTTGCGGACCGTGATGACCTAATGGTATCCAAACTACCTGAACCTAGAGTGGTCATCAGCCAAGTTCGTATTGATGAT
CAGGTTGCAAATGTCGGACAAAAAGAGTGGCAATTACCCGAGTTAGCGTATGGTTCTGCGATCAGTTTTGGCCTCGGCGT
GATGCCCAATGCTTACGGTGAAACGCTCTATTACCGTTTAAACCAGGAACACTGGCAAACCACAGAAGCCGGACAAGTCT
CTTTTGAACACCTTGCGGCAGGTGATTACTTGTTAAGTGTTAAAACCAGTTTAGTCGCAGGGGATTCCGTGCAAGTTCGC
TTTACGGTGTTACACCCGTGGTATCAAACTACGATGGCGATGGCGATTTTTGTTCTGCTTATCGTAGCGTTAGGCGGCTT
AGTTGTTTTCTGGCGTTCTCGTTACGTCAGTGTTCAAAACCGTGAGTTAACGGCATTGGTGGCATTGAAGACCAATCAAT
TACGTCATCAGAGTCGAGTGTTGCTCACCAGTAACCAACAACTTCGCAAACAGATCCAAGTTAGAAATTTGCTGGTTGAC
AATGTTGCCCGTTCATTACGTCAAAGTGTGGATGCATTACTGAGCAAGCCATCGGTTGAACCTGCCTCAGAGTATCAGGA
ACATCAAATGCGCATAGCAATGCTTTTGGAAGAGCTAAAAAGCTCGCCCAGCGATGGAACTGACGGGTATCTGCAAAACT
TTAACGTCAGCCATATCATTCAGTCGGTTGTCGACGTTTGGGAAGATGAACTCAGTAAAATCGGTGTTCAGGTGCACATT
TCTAGCGAATCGGATGACTATCGTGTCGCAGTAGGGCAGTTTAATCTGGATGTCATTTTTAATAGTGTTTTTGCAAGTGT
GTTGAAACGCGCCTATCGTGGCCAAATGCTTGATATTGTGATCAGAGAGCAAAACGATTTTGTCGAAGTGTCATTTATTG
ATTTTGGCCAGCCCTTTAGTACGAATACGGACGCCGAGGATAGCGCTGGTGTTGAGCCTGCAAAAGTCGATACTGCAATT
GAGAAGCTACCTGCTTTAGTCGAACAAAGTGGCGGACGCTTAAGCTTGTTCAGTAGCGCTGAGCGAAACAAGATCGAAAT
ACTGTGGCCGAAAGCGGTTGAGTCTCTGATAAATGACGAAGAGCCAAGCGTTTTTGTTGATTCAGTCGATCCCTCTCCAG
TTACCGAAGTCTCATCCGAAGGCGCTCCATCGCCAGAGCAGTTGTGGCTGGCGAAGGTCGAGGCTATGGTGGCAGAGCAT
TATACAAACCCAGAATTTGGCACGGCAATGGCGGCCAAGATGCTCTATGTTTCTGAGCGCAGCCTACAGAGACGGTTTAA
ATCAGCGAGCTCTCGTACATTTACGGATTACCTCACCGAAGTTCGTTTAGAAAAAGCATGCGAAAGTTTGTTGGCTGGTG
AAAAAGTGGTTGATGTGGCTTTCGCATCGGGATTTAACGATCCTTCTTACTTTAGTCAACGTTTTAAACTGTACTTTGGT
GTACCCCCTTCAAAATTTGCCAGTGACGCTCTAGAGTCGGAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1052-1126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.685

100

0.4

Multiple sequence alignment