Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   AN924_RS05055 Genome accession   NZ_CP012731
Coordinates   1002489..1003490 (-) Length   333 a.a.
NCBI ID   WP_002935300.1    Uniprot ID   -
Organism   Streptococcus suis strain 90-1330     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 997489..1008490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN924_RS05035 (AN924_10550) - 998433..999674 (-) 1242 WP_013730059.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  AN924_RS05040 (AN924_10560) comR 999939..1000856 (-) 918 WP_002935296.1 helix-turn-helix domain-containing protein Regulator
  AN924_RS05045 (AN924_10570) - 1001103..1001741 (-) 639 WP_002935298.1 HAD-IA family hydrolase -
  AN924_RS05050 (AN924_10580) - 1001743..1002489 (-) 747 WP_002935299.1 GNAT family N-acetyltransferase -
  AN924_RS05055 (AN924_10590) ruvB 1002489..1003490 (-) 1002 WP_002935300.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AN924_RS11295 (AN924_10600) - 1003785..1003958 (-) 174 WP_002935301.1 hypothetical protein -
  AN924_RS05060 (AN924_10610) - 1004060..1005772 (-) 1713 WP_002935303.1 ABC transporter ATP-binding protein -
  AN924_RS05065 (AN924_10620) - 1005775..1006545 (-) 771 WP_002935304.1 membrane protein -
  AN924_RS05070 (AN924_10630) - 1006551..1007423 (-) 873 WP_002935305.1 ABC transporter ATP-binding protein -
  AN924_RS05075 (AN924_10640) - 1007416..1007844 (-) 429 WP_002935307.1 Msa family membrane protein -
  AN924_RS05080 (AN924_10650) - 1007859..1008437 (-) 579 WP_002935308.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37640.15 Da        Isoelectric Point: 4.4673

>NTDB_id=136168 AN924_RS05055 WP_002935300.1 1002489..1003490(-) (ruvB) [Streptococcus suis strain 90-1330]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDNITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=136168 AN924_RS05055 WP_002935300.1 1002489..1003490(-) (ruvB) [Streptococcus suis strain 90-1330]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAGTATGTTGAGCGTACCCTGCGTCCGCAGAAATTAAA
TGAATACATCGGTCAGGATAAGGTCAAGGACCAGCTCAAAATCTTTATCGAGGCGGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTTTTTGGCCCACCGGGTCTGGGGAAGACCACCATGGCCTTTGTCATTGCCAACGAATTGGGCGTCAAT
ATCAAGCAGACCAGTGGTCCTGTTATTGAAAAAGCGGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAAATTCTCTACTCTGCTATGGAGGATTTCTACATCG
ACATTATGATTGGAGCAGGGGAGGCCAGTCGCTCCGTGCATTTGGAGTTGCCACCGTTTACCCTGATTGGAGCAACCACT
CGTGCGGGTATGCTATCCAATCCTCTGCGGGCCCGTTTTGGTATTACCGGTCATATGGAGTATTATGAACTGGCTGATTT
GACGGAGATTGTCGAGCGAACAGCGGACATCTTTGACATGGAGATTACTCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGCTTGCTCAAGCGGGTGCGGGATTTCGCACAGATTATGGGAGACGGCCTGATT
GATGATAACATTACGGACAAGGCCCTGACCATGCTGGATGTGGACCGCGAGGGGCTGGACTACGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGCGGCGGTCCCGTCGGCCTCAACACTCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACACGGACGGGGCGGGTTGCGACAGCC
AAGGCTTACGAACACCTGGGCTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

90.332

99.399

0.898
  ruvB Streptococcus pneumoniae R6

90.03

99.399

0.895
  ruvB Streptococcus pneumoniae D39

90.03

99.399

0.895
  ruvB Bacillus subtilis subsp. subtilis str. 168

58.589

97.898

0.574
  ruvB Helicobacter pylori 26695

51.368

98.799

0.508
  ruvB Synechocystis sp. PCC 6803

50.479

93.994

0.474