Detailed information NTG0136010

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SanJ4206_RS00425
• Genome accession: NZ_CP012719
• Coordinates: 72176..73174 (+)
• Length: 332 a.a.
• NCBI ID: WP_157621993.1
• Uniprot ID: -
• Organism: Streptococcus anginosus strain J4206
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 67176..78174

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SanJ4206_RS00400 (SanJ4206_0059)	-	67324..68151 (+)	828	WP_003027945.1	PTS system mannose/fructose/sorbose family transporter subunit IID	-
SanJ4206_RS00405 (SanJ4206_0060)	-	68169..68573 (+)	405	WP_003027944.1	PTS sugar transporter subunit IIA	-
SanJ4206_RS00410 (SanJ4206_0061)	-	68740..69909 (+)	1170	WP_003027943.1	SIS domain-containing protein	-
SanJ4206_RS00415 (SanJ4206_0062)	lacD	69920..70921 (+)	1002	WP_003027942.1	tagatose-bisphosphate aldolase	-
SanJ4206_RS00420 (SanJ4206_0063)	-	70964..72001 (+)	1038	WP_003027941.1	aldose epimerase family protein	-
SanJ4206_RS00425 (SanJ4206_0064)	ruvB	72176..73174 (+)	999	WP_157621993.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SanJ4206_RS00430 (SanJ4206_0065)	-	73176..73739 (+)	564	WP_037582569.1	nucleotidyltransferase family protein	-
SanJ4206_RS00440 (SanJ4206_0068c)	-	75351..76214 (-)	864	WP_022525239.1	IS982 family transposase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37422.78 Da
• Isoelectric Point: 4.3785

>NTDB_id=136010 SanJ4206_RS00425 WP_157621993.1 72176..73174(+) (ruvB) [Streptococcus anginosus strain J4206]
MSRILDNELMGDEELVERTLRPQYLREYIGQDKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGTGEASRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYEETDLTEIVERTAEIFEMEVTHEAAEELALRSRGTPRIANRLLKRVRDFAQIMGNGLID
DQITDQALTMLDVDQEGLDYVDQKILKTMIEVYGGGPVGLGTLSVNIAEEQETVEDMYEPYLIQKGFVMRTRTGRVATRK
AYEHLGYEYLEK

Nucleotide

• Length: 999 bp

>NTDB_id=136010 SanJ4206_RS00425 WP_157621993.1 72176..73174(+) (ruvB) [Streptococcus anginosus strain J4206]
ATGAGTAGAATTTTGGATAATGAATTGATGGGAGACGAGGAGCTCGTAGAGCGCACATTGCGTCCCCAGTATTTACGAGA
ATACATCGGTCAAGACAAGGTCAAAAATCAATTGAAAATTTTCATTGAGGCAGCTAAACTGCGAGATGAGGCGCTAGATC
ACACGTTGCTTTTTGGACCTCCAGGGTTGGGAAAGACCACTATGGCTTTCGTCATTGCCAATGAACTGGGAGTCAATCTC
AAGCAAACTTCGGGTCCAGTTATTGAGAAAGCGGGCGATTTGGTAGCAATCTTGAACGATTTGGAGCCGGGAGATGTTCT
CTTTATTGATGAGATTCATCGCTTGCCTATGTCTGTTGAAGAGGTGCTCTATAGCGCTATGGAAGATTTCTACATTGATA
TTATGATTGGAACGGGTGAGGCGAGCCGTAGTGTTCACTTGGACTTGCCACCGTTTACTTTGATTGGAGCAACAACGCGG
GCAGGTATGTTGTCAAATCCCTTGCGGGCTCGCTTTGGTATTACTGGACATATGGAATACTATGAGGAGACGGATTTGAC
CGAGATTGTAGAGCGAACGGCCGAAATCTTTGAGATGGAGGTTACACATGAAGCGGCTGAGGAGTTGGCTTTACGTAGCA
GAGGGACCCCTCGAATTGCCAATCGGCTTCTCAAACGCGTACGAGATTTTGCTCAGATTATGGGCAACGGACTAATTGAT
GACCAAATTACTGATCAAGCCCTGACGATGCTTGATGTGGATCAGGAAGGTCTAGATTATGTGGATCAGAAGATTCTCAA
GACCATGATTGAAGTGTATGGCGGCGGGCCAGTTGGTCTGGGAACTTTGTCTGTTAATATAGCAGAAGAGCAGGAAACGG
TAGAGGATATGTATGAGCCTTATTTGATCCAGAAAGGCTTTGTCATGCGGACACGAACAGGGCGCGTGGCAACCCGTAAG
GCTTACGAGCATTTGGGTTATGAGTATTTGGAGAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	92.169	100	0.922
ruvB	Streptococcus pneumoniae R6	91.867	100	0.919
ruvB	Streptococcus pneumoniae D39	91.867	100	0.919
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.202	98.193	0.581
ruvB	Helicobacter pylori 26695	51.084	97.289	0.497
ruvB	Synechocystis sp. PCC 6803	50.323	93.373	0.47