Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | RE92_RS11780 | Genome accession | NZ_CP010268 |
| Coordinates | 2681688..2682179 (+) | Length | 163 a.a. |
| NCBI ID | WP_010346813.1 | Uniprot ID | A0A3G8R109 |
| Organism | Paenibacillus polymyxa strain Sb3-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2676688..2687179
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RE92_RS11745 (RE92_11745) | - | 2677288..2677809 (+) | 522 | WP_040102457.1 | DUF4446 family protein | - |
| RE92_RS25650 | yyaC | 2677763..2678368 (-) | 606 | WP_080771881.1 | spore protease YyaC | - |
| RE92_RS11750 (RE92_11750) | - | 2678619..2679569 (+) | 951 | WP_013373910.1 | mechanosensitive ion channel family protein | - |
| RE92_RS11755 (RE92_11755) | - | 2679559..2679783 (+) | 225 | WP_013373909.1 | DUF951 domain-containing protein | - |
| RE92_RS11765 (RE92_11765) | - | 2680158..2680475 (-) | 318 | WP_016822453.1 | hypothetical protein | - |
| RE92_RS11770 (RE92_11770) | - | 2680842..2681036 (-) | 195 | WP_013373906.1 | YjzC family protein | - |
| RE92_RS11775 (RE92_11775) | rpsF | 2681354..2681638 (+) | 285 | WP_007433230.1 | 30S ribosomal protein S6 | - |
| RE92_RS11780 (RE92_11780) | ssbA | 2681688..2682179 (+) | 492 | WP_010346813.1 | single-stranded DNA-binding protein | Machinery gene |
| RE92_RS11785 (RE92_11785) | rpsR | 2682201..2682473 (+) | 273 | WP_013312800.1 | 30S ribosomal protein S18 | - |
| RE92_RS11790 (RE92_11790) | - | 2683003..2684745 (+) | 1743 | WP_040102458.1 | ABC transporter substrate-binding protein | - |
| RE92_RS11795 (RE92_11795) | - | 2684814..2685776 (+) | 963 | WP_013373904.1 | ABC transporter permease | - |
| RE92_RS11800 (RE92_11800) | opp4C | 2685788..2686711 (+) | 924 | WP_013373903.1 | oligopeptide ABC transporter permease | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 17928.67 Da Isoelectric Point: 4.8369
>NTDB_id=135606 RE92_RS11780 WP_010346813.1 2681688..2682179(+) (ssbA) [Paenibacillus polymyxa strain Sb3-1]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDSGNGGGNSGGGMREESPFGGGNSNSGRGNNNSRNNQDPFSDDGKPIDISDDD
LPF
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDSGNGGGNSGGGMREESPFGGGNSNSGRGNNNSRNNQDPFSDDGKPIDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=135606 RE92_RS11780 WP_010346813.1 2681688..2682179(+) (ssbA) [Paenibacillus polymyxa strain Sb3-1]
TTGTTGAACCGTGTCATTCTGATCGGTCGTTTGACCAAAGATCCAGAGCTGCGCTATACACCGTCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACAAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGCGCTAACTATCTTCGTAAAGGTCGTTTGACGGCTGTTGAAGGCCGTGTACAAGTGCGT
AATTATGAGAACAATGAAGGAAAACGTGTATACGTGACTGAAATTGTTGCTGATAATGTACGTTTCTTGGAATCTAACCG
CGATAGCGGCAACGGTGGCGGCAATAGCGGTGGAGGTATGCGTGAGGAGTCTCCTTTCGGAGGCGGTAACAGCAATAGTG
GGCGCGGGAATAATAACTCGCGAAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATCGATATTTCGGATGATGAT
CTACCATTTTAA
TTGTTGAACCGTGTCATTCTGATCGGTCGTTTGACCAAAGATCCAGAGCTGCGCTATACACCGTCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACAAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGCGCTAACTATCTTCGTAAAGGTCGTTTGACGGCTGTTGAAGGCCGTGTACAAGTGCGT
AATTATGAGAACAATGAAGGAAAACGTGTATACGTGACTGAAATTGTTGCTGATAATGTACGTTTCTTGGAATCTAACCG
CGATAGCGGCAACGGTGGCGGCAATAGCGGTGGAGGTATGCGTGAGGAGTCTCCTTTCGGAGGCGGTAACAGCAATAGTG
GGCGCGGGAATAATAACTCGCGAAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATCGATATTTCGGATGATGAT
CTACCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
60.116 |
100 |
0.638 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.292 |
100 |
0.528 |
| ssb | Neisseria meningitidis MC58 |
34.615 |
100 |
0.386 |
| ssb | Neisseria gonorrhoeae MS11 |
33.714 |
100 |
0.362 |