Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   RN86_RS07805 Genome accession   NZ_CP012648
Coordinates   1600828..1601508 (+) Length   226 a.a.
NCBI ID   WP_046165515.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1595828..1606508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS07785 (RN86_07780) - 1595892..1596308 (+) 417 WP_046165513.1 NUDIX hydrolase -
  RN86_RS07790 (RN86_07785) - 1596349..1597335 (-) 987 WP_008809179.1 L-lactate dehydrogenase -
  RN86_RS07795 (RN86_07790) gyrA 1597532..1599985 (+) 2454 WP_046165514.1 DNA gyrase subunit A -
  RN86_RS07800 (RN86_07795) - 1599989..1600744 (+) 756 WP_008809177.1 class A sortase -
  RN86_RS07805 (RN86_07800) radC 1600828..1601508 (+) 681 WP_046165515.1 DNA repair protein RadC Machinery gene
  RN86_RS07810 (RN86_07805) - 1601528..1602175 (-) 648 WP_008809175.1 redox-sensing transcriptional repressor Rex -
  RN86_RS07815 (RN86_07810) - 1602278..1602511 (-) 234 WP_046165516.1 DUF4649 family protein -
  RN86_RS07820 (RN86_07815) - 1602546..1602893 (-) 348 WP_046165517.1 DUF1831 domain-containing protein -
  RN86_RS07825 (RN86_07820) - 1602883..1604010 (-) 1128 WP_046165518.1 cysteine desulfurase family protein -
  RN86_RS07830 (RN86_07825) - 1604020..1604976 (-) 957 WP_096755428.1 ribose-phosphate diphosphokinase -
  RN86_RS07835 (RN86_07830) - 1605048..1605617 (-) 570 WP_046165520.1 CYTH domain-containing protein -
  RN86_RS07840 (RN86_07835) - 1605716..1606381 (+) 666 WP_046165521.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25639.47 Da        Isoelectric Point: 6.7740

>NTDB_id=135503 RN86_RS07805 WP_046165515.1 1600828..1601508(+) (radC) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MYSISFQEESLLPRERLVRLGAEQLSNQELLSILIRTGNKKENVFQIASRILVSVSSLTELRHMTLSELQGISGIGQVKA
IELQAMIELGSRISKAENFEGERILSSQKLAKKMQQELSHKKQEHLVALYLNTQNQIIHQQTIFIGSLTRSLAEPREILH
YAIKHMATSIILVHNHPSGATRPSRDDDQVTEKIKEACEMMGFVLLDHLIVGGDSYYSYREETDLI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=135503 RN86_RS07805 WP_046165515.1 1600828..1601508(+) (radC) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGTACAGTATATCATTTCAAGAGGAATCATTATTACCACGGGAACGATTAGTAAGACTAGGAGCAGAGCAGTTAAGCAA
TCAGGAATTGCTGTCTATTCTCATTCGTACAGGAAATAAAAAAGAGAATGTATTCCAAATAGCTAGTAGAATTTTAGTAT
CAGTATCAAGTCTGACTGAACTGCGTCACATGACTCTATCTGAACTACAGGGGATATCTGGTATAGGGCAAGTAAAGGCG
ATTGAGCTACAGGCCATGATTGAGTTGGGTAGTCGTATTTCAAAAGCGGAGAATTTTGAAGGAGAACGTATACTGAGTAG
TCAAAAACTTGCTAAGAAAATGCAACAGGAATTAAGTCATAAAAAACAGGAGCATTTGGTTGCACTTTATTTGAACACAC
AAAATCAGATTATTCATCAACAGACAATTTTCATTGGAAGTCTGACTCGGAGTTTAGCAGAACCTAGGGAGATTCTTCAT
TATGCGATTAAGCATATGGCGACATCAATTATCTTGGTCCATAATCATCCTTCAGGCGCGACTAGGCCAAGTAGGGATGA
TGATCAGGTGACTGAGAAAATAAAAGAAGCCTGCGAAATGATGGGCTTCGTTTTATTGGATCATTTAATTGTGGGAGGGG
ATAGCTATTATAGTTATCGAGAGGAAACAGACCTCATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-81)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

98.673

100

0.987
  radC Streptococcus pneumoniae TIGR4

75.664

100

0.757
  radC Streptococcus pneumoniae R6

75.221

100

0.752
  radC Streptococcus pneumoniae D39

75.221

100

0.752
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

47.619

92.92

0.442

Multiple sequence alignment