Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RG60_RS19640 Genome accession   NZ_CP010206
Coordinates   3766628..3767164 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain M11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3761628..3772164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG60_RS19615 (RG60_18615) soxR 3763356..3763820 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  RG60_RS19620 (RG60_18620) soxS 3763906..3764229 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  RG60_RS19625 (RG60_18625) pdeC 3764232..3765818 (-) 1587 WP_000019531.1 c-di-GMP phosphodiesterase PdeC -
  RG60_RS19635 (RG60_18630) yjcB 3766248..3766529 (+) 282 WP_001295689.1 YjcB family protein -
  RG60_RS19640 (RG60_18635) ssb 3766628..3767164 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RG60_RS19645 (RG60_18640) uvrA 3767418..3770240 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  RG60_RS19650 (RG60_18645) yjbR 3770275..3770631 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  RG60_RS19655 (RG60_18650) yjbQ 3770635..3771051 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RG60_RS19660 (RG60_18655) aphA 3771162..3771875 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=135041 RG60_RS19640 WP_000168305.1 3766628..3767164(-) (ssb) [Escherichia coli strain M11]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=135041 RG60_RS19640 WP_000168305.1 3766628..3767164(-) (ssb) [Escherichia coli strain M11]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment