Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   AMD33_RS10090 Genome accession   NZ_CP012588
Coordinates   496274..496921 (-) Length   215 a.a.
NCBI ID   WP_014608171.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MN-BM-A01     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 491274..501921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD33_RS02560 (AMD33_02555) holA 491604..492638 (+) 1035 WP_014608169.1 DNA polymerase III subunit delta -
  AMD33_RS02565 (AMD33_02560) sodA 492733..493338 (+) 606 WP_011680996.1 superoxide dismutase SodA -
  AMD33_RS02570 (AMD33_02565) - 493416..494665 (-) 1250 Protein_501 ISL3 family transposase -
  AMD33_RS02575 (AMD33_02570) - 494854..496233 (+) 1380 WP_014608170.1 serine hydrolase -
  AMD33_RS10090 cclA/cilC 496274..496921 (-) 648 WP_014608171.1 prepilin peptidase Machinery gene
  AMD33_RS02580 (AMD33_02575) - 497030..497551 (+) 522 WP_014608172.1 Dps family protein -
  AMD33_RS02585 (AMD33_02580) - 497640..498077 (+) 438 WP_011227072.1 Fur family transcriptional regulator -
  AMD33_RS02590 (AMD33_02585) - 498188..498394 (+) 207 WP_002950395.1 YqgQ family protein -
  AMD33_RS02595 (AMD33_02590) - 498387..499355 (+) 969 WP_011225772.1 ROK family glucokinase -
  AMD33_RS02600 (AMD33_02595) typA 499493..501340 (+) 1848 WP_011227074.1 translational GTPase TypA -
  AMD33_RS02605 (AMD33_02600) - 501364..501636 (+) 273 WP_002950398.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24867.98 Da        Isoelectric Point: 8.5469

>NTDB_id=134855 AMD33_RS10090 WP_014608171.1 496274..496921(-) (cclA/cilC) [Streptococcus thermophilus strain MN-BM-A01]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYNYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFISVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=134855 AMD33_RS10090 WP_014608171.1 496274..496921(-) (cclA/cilC) [Streptococcus thermophilus strain MN-BM-A01]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTATCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATAACTACCTAGATTTTGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATTAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.72

99.535

0.395
  cclA/cilC Streptococcus pneumoniae TIGR4

39.72

99.535

0.395
  cclA/cilC Streptococcus mitis NCTC 12261

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae Rx1

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae D39

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae R6

38.785

99.535

0.386