Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | AMD33_RS08260 | Genome accession | NZ_CP012588 |
| Coordinates | 1578306..1579307 (-) | Length | 333 a.a. |
| NCBI ID | WP_002948618.1 | Uniprot ID | Q5M2B1 |
| Organism | Streptococcus thermophilus strain MN-BM-A01 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1573306..1584307
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMD33_RS08215 (AMD33_08190) | rplP | 1573401..1573814 (-) | 414 | WP_002952157.1 | 50S ribosomal protein L16 | - |
| AMD33_RS08220 (AMD33_08195) | rpsC | 1573818..1574471 (-) | 654 | WP_011681716.1 | 30S ribosomal protein S3 | - |
| AMD33_RS08225 (AMD33_08200) | rplV | 1574484..1574828 (-) | 345 | WP_002887063.1 | 50S ribosomal protein L22 | - |
| AMD33_RS08230 (AMD33_08205) | rpsS | 1574844..1575122 (-) | 279 | WP_002952159.1 | 30S ribosomal protein S19 | - |
| AMD33_RS08235 (AMD33_08210) | rplB | 1575216..1576049 (-) | 834 | WP_002952161.1 | 50S ribosomal protein L2 | - |
| AMD33_RS08240 (AMD33_08215) | - | 1576067..1576363 (-) | 297 | WP_002887066.1 | 50S ribosomal protein L23 | - |
| AMD33_RS08245 (AMD33_08220) | rplD | 1576363..1576986 (-) | 624 | WP_002885795.1 | 50S ribosomal protein L4 | - |
| AMD33_RS08250 (AMD33_08225) | rplC | 1577011..1577637 (-) | 627 | WP_011681717.1 | 50S ribosomal protein L3 | - |
| AMD33_RS08255 (AMD33_08230) | rpsJ | 1577754..1578062 (-) | 309 | WP_002952168.1 | 30S ribosomal protein S10 | - |
| AMD33_RS08260 (AMD33_08235) | ruvB | 1578306..1579307 (-) | 1002 | WP_002948618.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| AMD33_RS08265 (AMD33_08240) | - | 1579390..1581213 (-) | 1824 | WP_011227608.1 | acyltransferase family protein | - |
| AMD33_RS08270 (AMD33_08245) | - | 1581210..1581620 (-) | 411 | WP_002948620.1 | membrane protein | - |
| AMD33_RS08275 (AMD33_08250) | - | 1581617..1582051 (-) | 435 | WP_011681719.1 | low molecular weight protein-tyrosine-phosphatase | - |
| AMD33_RS08280 (AMD33_08255) | - | 1582334..1583626 (-) | 1293 | WP_011681720.1 | adenylosuccinate synthase | - |
Sequence
Protein
Download Length: 333 a.a. Molecular weight: 37540.93 Da Isoelectric Point: 4.4605
>NTDB_id=134836 AMD33_RS08260 WP_002948618.1 1578306..1579307(-) (ruvB) [Streptococcus thermophilus strain MN-BM-A01]
MARILDNDLLGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVNL
KQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAGETSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGINGHMEYYELPDLTEIVERTSEIFEMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGVID
DKIADQALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATAK
AYEHMGYDYTRDN
MARILDNDLLGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVNL
KQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAGETSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGINGHMEYYELPDLTEIVERTSEIFEMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGVID
DKIADQALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATAK
AYEHMGYDYTRDN
Nucleotide
Download Length: 1002 bp
>NTDB_id=134836 AMD33_RS08260 WP_002948618.1 1578306..1579307(-) (ruvB) [Streptococcus thermophilus strain MN-BM-A01]
ATGGCAAGAATATTAGATAATGATTTACTAGGAGATGAGGAGTATGTGGAGCGTACCCTTCGCCCTCAGTACTTTAAGGA
ATATATTGGTCAAGATAAGGTTAAGGACCAATTAAAAATTTTTATAGAAGCAGCTAAACTCCGTGATGAGGCTCTAGACC
ATACCCTTTTGTTTGGCCCACCTGGTTTGGGTAAAACGACTATGGCATTTGTAATCGCCAATGAGATGGGAGTGAATTTG
AAGCAAACATCTGGGCCGGCAATTGAAAAGGCTGGTGATTTAGTTGCCATACTCAATGACTTGGAGCCGGGAGACATCTT
ATTTATTGATGAGATTCATCGTATGCCTATGGCAGTGGAAGAAGTTCTTTATAGCGCTATGGAAGATTACTACATCGATA
TCATGATTGGAGCAGGTGAAACAAGTCGTAGTGTTCATCTAGACCTGCCTCCCTTTACTTTGGTTGGTGCGACCACACGA
GCAGGTATGCTGTCAAATCCCTTGAGAGCTCGCTTTGGAATCAATGGTCATATGGAATATTATGAGTTACCTGATTTGAC
AGAGATTGTAGAACGTACTTCGGAAATCTTTGAAATGACAATAACACCAGAGGCTGCCTTGGAATTAGCACGGCGTAGTC
GTGGAACACCACGTATTGCTAACCGCCTGCTTAAGCGCGTGCGAGACTATGCTCAAATCATGGGTGATGGTGTCATTGAC
GATAAGATTGCAGATCAGGCATTGACTATGCTGGATGTAGATCATGAAGGGTTAGACTACGTTGACCAAAAAATCCTCCG
AACTATGATTGAGATGTATGGGGGAGGCCCAGTTGGCTTAGGTACTTTATCAGTTAATATTGCTGAAGAGCGAGAAACAG
TAGAAGATATGTATGAACCCTACCTAATCCAAAAAGGTTTCATTATGCGTACACGAACAGGACGTGTCGCAACTGCTAAA
GCCTATGAGCATATGGGATATGACTATACTCGAGATAATTAA
ATGGCAAGAATATTAGATAATGATTTACTAGGAGATGAGGAGTATGTGGAGCGTACCCTTCGCCCTCAGTACTTTAAGGA
ATATATTGGTCAAGATAAGGTTAAGGACCAATTAAAAATTTTTATAGAAGCAGCTAAACTCCGTGATGAGGCTCTAGACC
ATACCCTTTTGTTTGGCCCACCTGGTTTGGGTAAAACGACTATGGCATTTGTAATCGCCAATGAGATGGGAGTGAATTTG
AAGCAAACATCTGGGCCGGCAATTGAAAAGGCTGGTGATTTAGTTGCCATACTCAATGACTTGGAGCCGGGAGACATCTT
ATTTATTGATGAGATTCATCGTATGCCTATGGCAGTGGAAGAAGTTCTTTATAGCGCTATGGAAGATTACTACATCGATA
TCATGATTGGAGCAGGTGAAACAAGTCGTAGTGTTCATCTAGACCTGCCTCCCTTTACTTTGGTTGGTGCGACCACACGA
GCAGGTATGCTGTCAAATCCCTTGAGAGCTCGCTTTGGAATCAATGGTCATATGGAATATTATGAGTTACCTGATTTGAC
AGAGATTGTAGAACGTACTTCGGAAATCTTTGAAATGACAATAACACCAGAGGCTGCCTTGGAATTAGCACGGCGTAGTC
GTGGAACACCACGTATTGCTAACCGCCTGCTTAAGCGCGTGCGAGACTATGCTCAAATCATGGGTGATGGTGTCATTGAC
GATAAGATTGCAGATCAGGCATTGACTATGCTGGATGTAGATCATGAAGGGTTAGACTACGTTGACCAAAAAATCCTCCG
AACTATGATTGAGATGTATGGGGGAGGCCCAGTTGGCTTAGGTACTTTATCAGTTAATATTGCTGAAGAGCGAGAAACAG
TAGAAGATATGTATGAACCCTACCTAATCCAAAAAGGTTTCATTATGCGTACACGAACAGGACGTGTCGCAACTGCTAAA
GCCTATGAGCATATGGGATATGACTATACTCGAGATAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Streptococcus pneumoniae TIGR4 |
88.182 |
99.099 |
0.874 |
| ruvB | Streptococcus pneumoniae R6 |
87.879 |
99.099 |
0.871 |
| ruvB | Streptococcus pneumoniae D39 |
87.879 |
99.099 |
0.871 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
58.359 |
98.799 |
0.577 |
| ruvB | Helicobacter pylori 26695 |
49.844 |
96.396 |
0.48 |
| ruvB | Synechocystis sp. PCC 6803 |
50.799 |
93.994 |
0.477 |