Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AMD33_RS05950 Genome accession   NZ_CP012588
Coordinates   1148207..1148893 (-) Length   228 a.a.
NCBI ID   WP_014727630.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MN-BM-A01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1143207..1153893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD33_RS05920 (AMD33_05905) - 1143289..1143864 (+) 576 WP_002951444.1 CYTH domain-containing protein -
  AMD33_RS05925 (AMD33_05910) - 1144227..1145198 (+) 972 WP_002951446.1 ribose-phosphate diphosphokinase -
  AMD33_RS05930 (AMD33_05915) - 1145202..1146314 (+) 1113 WP_014608554.1 cysteine desulfurase family protein -
  AMD33_RS05935 (AMD33_05920) - 1146316..1146663 (+) 348 WP_014608555.1 DUF1831 domain-containing protein -
  AMD33_RS05940 (AMD33_05925) - 1146807..1147466 (+) 660 WP_014608556.1 redox-sensing transcriptional repressor Rex -
  AMD33_RS05945 (AMD33_05930) - 1147459..1148154 (+) 696 WP_014727629.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  AMD33_RS05950 (AMD33_05935) radC 1148207..1148893 (-) 687 WP_014727630.1 RadC family protein Machinery gene
  AMD33_RS05955 (AMD33_05940) - 1148942..1150726 (-) 1785 WP_014727631.1 rhamnan synthesis F family protein -
  AMD33_RS05960 (AMD33_05945) - 1150723..1151778 (-) 1056 WP_014727632.1 glycosyltransferase family 2 protein -
  AMD33_RS05965 (AMD33_05950) - 1151798..1153003 (-) 1206 WP_014727633.1 ABC transporter ATP-binding protein -
  AMD33_RS05970 (AMD33_05955) - 1153003..1153812 (-) 810 WP_002948020.1 ABC transporter permease -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25819.86 Da        Isoelectric Point: 6.7542

>NTDB_id=134804 AMD33_RS05950 WP_014727630.1 1148207..1148893(-) (radC) [Streptococcus thermophilus strain MN-BM-A01]
MYSIVAEESGLLPRERLLQKGAEVLSDQELLAIVLRTGTRSESVLSMANRILKGMTSLADLSRLSLNELQEIPGIGRVKS
IELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLDTQNRIIQQKTVFIGGVRRSIAEPREILH
YACHLMATSLIVVHNHPSGEAYPSRNDIDFTQKIKRSCDDLGICLLDHLIVGKSTYYSFREEREDFEL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=134804 AMD33_RS05950 WP_014727630.1 1148207..1148893(-) (radC) [Streptococcus thermophilus strain MN-BM-A01]
ATGTATAGTATTGTAGCTGAGGAGTCGGGGCTTTTGCCTCGTGAGCGTCTCTTACAAAAGGGTGCAGAGGTCTTGTCTGA
CCAGGAACTGTTGGCGATAGTGCTGCGAACGGGGACTAGGTCTGAGTCGGTCCTATCCATGGCCAACCGTATTTTAAAAG
GAATGACGAGTTTGGCGGATTTGTCTCGCTTGTCTCTGAATGAGCTTCAGGAGATTCCTGGTATTGGGCGTGTGAAATCC
ATTGAGCTGAAGGCTATGGTGGAGTTGGCTAAGCGGATTGAGAAGGCTGAGTTGGCTCGTTCTGAGCAGATTATGTCTAG
TCAGCAGGTGGCACGTCGCATGATGTTAGATATTGGTGACAAGCCTCAGGAGCATCTGGTGGCCATCTACCTTGATACGC
AGAATCGTATTATTCAGCAAAAGACGGTCTTTATTGGTGGGGTTCGCCGTTCGATTGCCGAGCCGCGTGAGATTTTGCAT
TATGCTTGTCATCTGATGGCAACTTCCTTGATTGTGGTCCACAATCATCCTTCGGGGGAAGCCTATCCTAGTCGCAATGA
TATTGATTTTACTCAAAAGATTAAGAGGTCCTGTGACGACTTGGGAATTTGTCTTCTTGACCATCTGATTGTTGGAAAAT
CAACTTATTATTCCTTTCGTGAGGAGAGGGAGGATTTTGAACTTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(105-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

59.375

98.246

0.583
  radC Streptococcus pneumoniae R6

58.929

98.246

0.579
  radC Streptococcus pneumoniae D39

58.929

98.246

0.579
  radC Streptococcus gordonii str. Challis substr. CH1

57.658

97.368

0.561
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

47.642

92.982

0.443