Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QR42_RS18605 Genome accession   NZ_CP010075
Coordinates   3691742..3692284 (-) Length   180 a.a.
NCBI ID   WP_007497456.1    Uniprot ID   A0A5K1N7D0
Organism   Bacillus sp. WP8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3686742..3697284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS18580 (QR42_18580) - 3687013..3687621 (-) 609 WP_039182909.1 alpha/beta hydrolase -
  QR42_RS18585 (QR42_18585) - 3687618..3688589 (-) 972 WP_039182911.1 ring-cleaving dioxygenase -
  QR42_RS18590 (QR42_18590) opuFB 3688782..3690299 (-) 1518 WP_039182915.1 osmoprotectant update ABC transporter permease/substrate-binding subunit OpuFB -
  QR42_RS18595 (QR42_18595) - 3690292..3691257 (-) 966 WP_039182918.1 ABC transporter ATP-binding protein -
  QR42_RS18600 (QR42_18600) rpsR 3691462..3691701 (-) 240 WP_008359105.1 30S ribosomal protein S18 -
  QR42_RS18605 (QR42_18605) ssbA 3691742..3692284 (-) 543 WP_007497456.1 single-stranded DNA-binding protein SsbA Machinery gene
  QR42_RS18610 (QR42_18610) rpsF 3692321..3692608 (-) 288 WP_024424058.1 30S ribosomal protein S6 -
  QR42_RS18615 (QR42_18615) ychF 3692717..3693817 (-) 1101 WP_039182923.1 redox-regulated ATPase YchF -
  QR42_RS18620 (QR42_18620) - 3694034..3694240 (-) 207 WP_008347561.1 DUF951 domain-containing protein -
  QR42_RS18625 (QR42_18625) - 3694535..3695854 (+) 1320 WP_039182925.1 hypothetical protein -
  QR42_RS18630 (QR42_18630) - 3695870..3696280 (+) 411 WP_039182926.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19605.15 Da        Isoelectric Point: 4.6109

>NTDB_id=134076 QR42_RS18605 WP_007497456.1 3691742..3692284(-) (ssbA) [Bacillus sp. WP8]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=134076 QR42_RS18605 WP_007497456.1 3691742..3692284(-) (ssbA) [Bacillus sp. WP8]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGCAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAACGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N7D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

55.376

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.361

Multiple sequence alignment