Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QR42_RS16065 Genome accession   NZ_CP010075
Coordinates   3164040..3165437 (-) Length   465 a.a.
NCBI ID   WP_144246074.1    Uniprot ID   -
Organism   Bacillus sp. WP8     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3159040..3170437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS16030 (QR42_16030) flgL 3159240..3160148 (-) 909 WP_039181799.1 flagellar hook-associated protein FlgL -
  QR42_RS16035 (QR42_16035) flgK 3160158..3161678 (-) 1521 WP_039181802.1 flagellar hook-associated protein FlgK -
  QR42_RS16040 (QR42_16040) - 3161694..3162176 (-) 483 WP_039181805.1 flagellar protein FlgN -
  QR42_RS16045 (QR42_16045) flgM 3162195..3162458 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  QR42_RS16050 (QR42_16050) - 3162538..3162957 (-) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  QR42_RS16055 (QR42_16055) - 3163014..3163700 (-) 687 WP_064497978.1 ComF family protein -
  QR42_RS16060 (QR42_16060) - 3163697..3163990 (-) 294 WP_039181811.1 competence protein ComFB -
  QR42_RS16065 (QR42_16065) comFA 3164040..3165437 (-) 1398 WP_144246074.1 DEAD/DEAH box helicase Machinery gene
  QR42_RS16070 (QR42_16070) - 3165558..3166400 (-) 843 WP_039181815.1 DegV family protein -
  QR42_RS16075 (QR42_16075) degU 3166617..3167306 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  QR42_RS16080 (QR42_16080) degS 3167371..3168546 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  QR42_RS16085 (QR42_16085) - 3168768..3169436 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53229.16 Da        Isoelectric Point: 10.0127

>NTDB_id=134069 QR42_RS16065 WP_144246074.1 3164040..3165437(-) (comFA) [Bacillus sp. WP8]
MNMDKAMELMRQLHSRHLLTAETRCPQYKLDWLEEKGLVNRTPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKATECGFLYEWTGPQIVETYRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGMTIAVLYGGSSQRFQIAPLVIATTHQLMRYKNAFDVVIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTRKVSSGKLEAIKIPLRFHKQPLPVPTFHWIGHWKKKLKKNQLPRKVMNWMQ
RHIENKRRVLLFVPSIATMKKVTKILREHSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIVKMNDTAANEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=134069 QR42_RS16065 WP_144246074.1 3164040..3165437(-) (comFA) [Bacillus sp. WP8]
TTGAATATGGACAAAGCAATGGAACTAATGCGGCAGCTGCATTCACGCCATTTGCTCACCGCCGAAACAAGGTGCCCACA
GTACAAATTGGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGAACACCTGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTACTTTGCTCACTCTCCATGTGAAGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAACTGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATAGTAGAAACATA
TCGAGCTGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATCAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGGGCAGGGAAAACGGAGGTGCTTTTTCACGGAATCGAATATGCGTTA
AATCAAGGAATGAGTGTCTGTATTGCGACCCCTAGAACAGATGTTGTGCTTGAACTCGAACCACGACTTAGAAAAGCATT
TCAAGGGATGACAATAGCCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAGATTGCACCGCTAGTGATCGCCACAACCC
ATCAGCTGATGAGGTACAAAAATGCATTTGATGTGGTCATTGTAGATGAAGTCGATGCCTTTCCTTATTCAATGGATGAA
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAAAGGTTTCTAGTGGAAAACTGGAAGCGATAAAAATTCCTCTGCGTTTTCATAAACAACCATTACCCGTAC
CAACCTTTCATTGGATTGGACATTGGAAAAAGAAATTAAAAAAGAATCAGCTGCCCCGTAAAGTGATGAATTGGATGCAG
AGACATATTGAAAATAAAAGAAGAGTATTACTTTTTGTTCCTTCAATTGCTACCATGAAGAAGGTAACGAAGATTCTTCG
AGAACACTCCTTAAACGTGGAGGGAGTATCTGCCGATGATCCAGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTATTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGAAGAGTAGGCAGACACCCGGATTATTGTACAGGAGA
CGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTTAAAATGAATGATACGGCTG
CAAATGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-265)

Helicase conserved C-terminal domain (Helicase_C)

(322-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.308

97.849

0.512

Multiple sequence alignment