Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QR42_RS16075 Genome accession   NZ_CP010075
Coordinates   3166617..3167306 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. WP8     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3161617..3172306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS16040 (QR42_16040) - 3161694..3162176 (-) 483 WP_039181805.1 flagellar protein FlgN -
  QR42_RS16045 (QR42_16045) flgM 3162195..3162458 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  QR42_RS16050 (QR42_16050) - 3162538..3162957 (-) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  QR42_RS16055 (QR42_16055) - 3163014..3163700 (-) 687 WP_064497978.1 ComF family protein -
  QR42_RS16060 (QR42_16060) - 3163697..3163990 (-) 294 WP_039181811.1 competence protein ComFB -
  QR42_RS16065 (QR42_16065) comFA 3164040..3165437 (-) 1398 WP_144246074.1 DEAD/DEAH box helicase Machinery gene
  QR42_RS16070 (QR42_16070) - 3165558..3166400 (-) 843 WP_039181815.1 DegV family protein -
  QR42_RS16075 (QR42_16075) degU 3166617..3167306 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  QR42_RS16080 (QR42_16080) degS 3167371..3168546 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  QR42_RS16085 (QR42_16085) - 3168768..3169436 (+) 669 WP_012011434.1 YigZ family protein -
  QR42_RS16090 (QR42_16090) - 3169421..3170512 (+) 1092 WP_039181819.1 LCP family protein -
  QR42_RS16095 (QR42_16095) - 3170548..3171615 (-) 1068 WP_034660156.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=134070 QR42_RS16075 WP_008348273.1 3166617..3167306(-) (degU) [Bacillus sp. WP8]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=134070 QR42_RS16075 WP_008348273.1 3166617..3167306(-) (degU) [Bacillus sp. WP8]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGAGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTTATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCCTAGCAACTAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGCGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATTGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment