Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QR42_RS11130 Genome accession   NZ_CP010075
Coordinates   2225456..2225749 (-) Length   97 a.a.
NCBI ID   WP_024422977.1    Uniprot ID   A0A0M2EIN6
Organism   Bacillus sp. WP8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2220456..2230749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS11080 (QR42_11080) sinR 2220619..2220954 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  QR42_RS11085 (QR42_11085) - 2221022..2221822 (-) 801 WP_039179929.1 TasA family protein -
  QR42_RS11090 (QR42_11090) - 2221880..2222452 (-) 573 WP_039183199.1 signal peptidase I -
  QR42_RS11095 (QR42_11095) tapA 2222504..2223031 (-) 528 WP_039179933.1 amyloid fiber anchoring/assembly protein TapA -
  QR42_RS11100 (QR42_11100) - 2223331..2223609 (+) 279 WP_231120214.1 DUF3889 domain-containing protein -
  QR42_RS11105 (QR42_11105) - 2223643..2223837 (-) 195 WP_024718846.1 YqzE family protein -
  QR42_RS11110 (QR42_11110) comGG 2223897..2224280 (-) 384 WP_039179939.1 competence type IV pilus minor pilin ComGG -
  QR42_RS11115 (QR42_11115) comGF 2224277..2224807 (-) 531 WP_257218391.1 competence type IV pilus minor pilin ComGF -
  QR42_RS11120 (QR42_11120) comGE 2224716..2225033 (-) 318 WP_039179945.1 competence type IV pilus minor pilin ComGE -
  QR42_RS11125 (QR42_11125) comGD 2225017..2225463 (-) 447 WP_039179947.1 competence type IV pilus minor pilin ComGD -
  QR42_RS11130 (QR42_11130) comGC 2225456..2225749 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  QR42_RS11135 (QR42_11135) comGB 2225766..2226806 (-) 1041 WP_039179950.1 competence type IV pilus assembly protein ComGB -
  QR42_RS11140 (QR42_11140) comGA 2226787..2227857 (-) 1071 WP_084096410.1 competence type IV pilus ATPase ComGA Machinery gene
  QR42_RS11145 (QR42_11145) - 2228035..2228910 (-) 876 WP_039179956.1 STAS domain-containing protein -
  QR42_RS11155 (QR42_11155) - 2229135..2229515 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QR42_RS11160 (QR42_11160) - 2229731..2229973 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  QR42_RS11165 (QR42_11165) - 2230021..2230659 (-) 639 WP_039179959.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10686.62 Da        Isoelectric Point: 7.3218

>NTDB_id=134052 QR42_RS11130 WP_024422977.1 2225456..2225749(-) (comGC) [Bacillus sp. WP8]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQAIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGNVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=134052 QR42_RS11130 WP_024422977.1 2225456..2225749(-) (comGC) [Bacillus sp. WP8]
ATGAATGATAAAGGGTTTACCCTGTTAGAAATGTTAATTGTCATGCTCGTGATATCCATTCTTTTACTCATTACCATACC
GAATATCACACGTCATCACCAAGCAATTCAAGCAAAGGGCTGTGAAGGGCTCAAATCAATGGTCAGCACACAAGTGATGG
CGTATGAATTGGAGCATGATGGGAAGACGCCATCTTTAGCTGAGTTAGAAAAAGAAGGTTATGTTAAAAAGGGATTAACC
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCAACGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2EIN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

42.222

92.784

0.392
  comGC Staphylococcus aureus N315

42.222

92.784

0.392

Multiple sequence alignment