Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | QR42_RS11080 | Genome accession | NZ_CP010075 |
| Coordinates | 2220619..2220954 (+) | Length | 111 a.a. |
| NCBI ID | WP_024422969.1 | Uniprot ID | - |
| Organism | Bacillus sp. WP8 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2215619..2225954
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QR42_RS11065 (QR42_11065) | gcvT | 2216107..2217204 (-) | 1098 | WP_039179920.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| QR42_RS11070 (QR42_11070) | - | 2217756..2219426 (+) | 1671 | WP_039179923.1 | SNF2-related protein | - |
| QR42_RS11075 (QR42_11075) | - | 2219441..2220238 (+) | 798 | WP_039179926.1 | YqhG family protein | - |
| QR42_RS19040 | - | 2220421..2220585 (+) | 165 | WP_073206269.1 | anti-repressor SinI family protein | - |
| QR42_RS11080 (QR42_11080) | sinR | 2220619..2220954 (+) | 336 | WP_024422969.1 | transcriptional regulator SinR | Regulator |
| QR42_RS11085 (QR42_11085) | - | 2221022..2221822 (-) | 801 | WP_039179929.1 | TasA family protein | - |
| QR42_RS11090 (QR42_11090) | - | 2221880..2222452 (-) | 573 | WP_039183199.1 | signal peptidase I | - |
| QR42_RS11095 (QR42_11095) | tapA | 2222504..2223031 (-) | 528 | WP_039179933.1 | amyloid fiber anchoring/assembly protein TapA | - |
| QR42_RS11100 (QR42_11100) | - | 2223331..2223609 (+) | 279 | WP_231120214.1 | DUF3889 domain-containing protein | - |
| QR42_RS11105 (QR42_11105) | - | 2223643..2223837 (-) | 195 | WP_024718846.1 | YqzE family protein | - |
| QR42_RS11110 (QR42_11110) | comGG | 2223897..2224280 (-) | 384 | WP_039179939.1 | competence type IV pilus minor pilin ComGG | - |
| QR42_RS11115 (QR42_11115) | comGF | 2224277..2224807 (-) | 531 | WP_257218391.1 | competence type IV pilus minor pilin ComGF | - |
| QR42_RS11120 (QR42_11120) | comGE | 2224716..2225033 (-) | 318 | WP_039179945.1 | competence type IV pilus minor pilin ComGE | - |
| QR42_RS11125 (QR42_11125) | comGD | 2225017..2225463 (-) | 447 | WP_039179947.1 | competence type IV pilus minor pilin ComGD | - |
| QR42_RS11130 (QR42_11130) | comGC | 2225456..2225749 (-) | 294 | WP_024422977.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12978.56 Da Isoelectric Point: 5.0026
>NTDB_id=134051 QR42_RS11080 WP_024422969.1 2220619..2220954(+) (sinR) [Bacillus sp. WP8]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=134051 QR42_RS11080 WP_024422969.1 2220619..2220954(+) (sinR) [Bacillus sp. WP8]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |