Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QR42_RS11140 Genome accession   NZ_CP010075
Coordinates   2226787..2227857 (-) Length   356 a.a.
NCBI ID   WP_084096410.1    Uniprot ID   -
Organism   Bacillus sp. WP8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2221787..2232857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS11090 (QR42_11090) - 2221880..2222452 (-) 573 WP_039183199.1 signal peptidase I -
  QR42_RS11095 (QR42_11095) tapA 2222504..2223031 (-) 528 WP_039179933.1 amyloid fiber anchoring/assembly protein TapA -
  QR42_RS11100 (QR42_11100) - 2223331..2223609 (+) 279 WP_231120214.1 DUF3889 domain-containing protein -
  QR42_RS11105 (QR42_11105) - 2223643..2223837 (-) 195 WP_024718846.1 YqzE family protein -
  QR42_RS11110 (QR42_11110) comGG 2223897..2224280 (-) 384 WP_039179939.1 competence type IV pilus minor pilin ComGG -
  QR42_RS11115 (QR42_11115) comGF 2224277..2224807 (-) 531 WP_257218391.1 competence type IV pilus minor pilin ComGF -
  QR42_RS11120 (QR42_11120) comGE 2224716..2225033 (-) 318 WP_039179945.1 competence type IV pilus minor pilin ComGE -
  QR42_RS11125 (QR42_11125) comGD 2225017..2225463 (-) 447 WP_039179947.1 competence type IV pilus minor pilin ComGD -
  QR42_RS11130 (QR42_11130) comGC 2225456..2225749 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  QR42_RS11135 (QR42_11135) comGB 2225766..2226806 (-) 1041 WP_039179950.1 competence type IV pilus assembly protein ComGB -
  QR42_RS11140 (QR42_11140) comGA 2226787..2227857 (-) 1071 WP_084096410.1 competence type IV pilus ATPase ComGA Machinery gene
  QR42_RS11145 (QR42_11145) - 2228035..2228910 (-) 876 WP_039179956.1 STAS domain-containing protein -
  QR42_RS11155 (QR42_11155) - 2229135..2229515 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QR42_RS11160 (QR42_11160) - 2229731..2229973 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  QR42_RS11165 (QR42_11165) - 2230021..2230659 (-) 639 WP_039179959.1 MBL fold metallo-hydrolase -
  QR42_RS19045 (QR42_11170) - 2230817..2230990 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  QR42_RS11175 (QR42_11175) - 2231210..2231524 (-) 315 WP_034319597.1 MTH1187 family thiamine-binding protein -
  QR42_RS11180 (QR42_11180) - 2231598..2232851 (-) 1254 WP_039179966.1 MFS transporter -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40370.87 Da        Isoelectric Point: 9.4005

>NTDB_id=134053 QR42_RS11140 WP_084096410.1 2226787..2227857(-) (comGA) [Bacillus sp. WP8]
MYGIEYLRQELLEEACRMRASDVHIVPKEKEALVSFRVDSDLIQQRTIDKKTGERLIAHFKFLSSMDIGEKRRPQNGSLA
VVLRSGQVFIRMSTLPTVNDESLVIRILPQDHVPKIKHLSLFPKASARLLSFLKHSHGLILFTGPTNSGKTTTLYSLIQF
AKKNFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVLSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELTCPFCGETCQLYCKLNRPIRRTNVFELLFGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKNTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=134053 QR42_RS11140 WP_084096410.1 2226787..2227857(-) (comGA) [Bacillus sp. WP8]
TTGTATGGGATTGAATATTTAAGGCAAGAGCTGCTAGAAGAAGCATGCCGCATGAGAGCATCTGATGTGCACATTGTCCC
AAAAGAAAAGGAAGCGTTGGTATCTTTCCGCGTAGACTCAGATTTAATCCAGCAGCGAACCATTGATAAAAAAACCGGCG
AGCGGCTCATTGCTCATTTTAAATTTTTATCTTCTATGGATATCGGGGAAAAAAGGAGACCGCAAAATGGGTCATTAGCT
GTGGTGCTAAGAAGCGGCCAGGTGTTTATTCGAATGTCTACCTTACCAACTGTAAATGATGAGAGTTTAGTGATTAGAAT
ATTGCCGCAGGATCATGTTCCGAAAATAAAACACCTGTCACTATTTCCGAAAGCTTCAGCCAGGTTATTGTCATTTTTGA
AGCATTCGCATGGGCTTATTTTATTTACCGGTCCAACCAATTCGGGGAAAACAACAACCCTCTATTCACTGATCCAGTTT
GCAAAAAAGAATTTCAACCGAAATATTATTACGCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGTTACAGGTTCA
AGTAAATGAAAAAGCCGGCATCACATATGCCGCAGGATTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTAG
GAGAAATAAGAGATGCTGAAACGGCCAGAACGGCGATTAGAGCAGCACTGACAGGCCATTTAGTATTGAGTACGCTCCAT
GCAAAAAATGCAAAAGGAGCCCTTTATCGTATGCTTGAATTTGGTGTCACGATGAATGAACTTGAGCAAACGATGGTTGC
GATTGCTGCCCAGCGATTAATCGAGCTCACCTGTCCTTTTTGCGGAGAAACATGTCAGCTTTACTGTAAATTAAATCGAC
CGATCAGACGAACAAATGTATTTGAACTGCTATTCGGAAAAGAGCTTGGTGAGTGTATCAAGGAGGCTAAAGGAGAATAT
GCTCACTCGTCATATGAAACACTGCAAAGATTAATTCGTAAAGGAGTGGCACTCGGCTATTTATCAAAAAACACTTACCA
TCGCTGGGTTTATGAAGAAGCGAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

65.254

99.438

0.649

Multiple sequence alignment