Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PK28_RS11605 | Genome accession | NZ_CP010054 |
| Coordinates | 2710387..2710734 (-) | Length | 115 a.a. |
| NCBI ID | WP_044514026.1 | Uniprot ID | A0A0A7LLS2 |
| Organism | Hymenobacter sp. DG25B | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2705387..2715734
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PK28_RS11580 (PK28_11580) | - | 2705398..2706807 (+) | 1410 | WP_044514019.1 | vWA domain-containing protein | - |
| PK28_RS11585 (PK28_11585) | - | 2706897..2707196 (+) | 300 | WP_044514021.1 | GIY-YIG nuclease family protein | - |
| PK28_RS11590 (PK28_11590) | - | 2707326..2708282 (+) | 957 | WP_044514024.1 | transketolase family protein | - |
| PK28_RS11595 (PK28_11595) | - | 2708551..2709126 (-) | 576 | WP_048826389.1 | hypothetical protein | - |
| PK28_RS11600 (PK28_11600) | - | 2709267..2710352 (-) | 1086 | WP_052430557.1 | tyrosine-type recombinase/integrase | - |
| PK28_RS11605 (PK28_11605) | ssb | 2710387..2710734 (-) | 348 | WP_044514026.1 | single-stranded DNA-binding protein | Machinery gene |
| PK28_RS11610 (PK28_11610) | - | 2710745..2711395 (-) | 651 | WP_044514029.1 | zinc ribbon domain-containing protein | - |
| PK28_RS11615 (PK28_11615) | - | 2711627..2712172 (+) | 546 | WP_044514032.1 | RNA polymerase sigma factor | - |
| PK28_RS19060 | - | 2712203..2712676 (+) | 474 | WP_048825932.1 | hypothetical protein | - |
| PK28_RS11625 (PK28_11625) | - | 2712681..2713190 (+) | 510 | WP_048825933.1 | hypothetical protein | - |
| PK28_RS11630 (PK28_11630) | - | 2713469..2714686 (+) | 1218 | WP_044514034.1 | aspartate aminotransferase family protein | - |
| PK28_RS11635 (PK28_11635) | - | 2714693..2715133 (-) | 441 | WP_044514037.1 | TerB family tellurite resistance protein | - |
Sequence
Protein
Download Length: 115 a.a. Molecular weight: 12822.69 Da Isoelectric Point: 8.4434
>NTDB_id=133924 PK28_RS11605 WP_044514026.1 2710387..2710734(-) (ssb) [Hymenobacter sp. DG25B]
MRGLNKVALIGNLGKDPEVQVLEGNVPVAKFSLATSESYRDKTGQLHTSTDWHTVVLWRGLAELAQAYLRKGSLVYVEGK
LKNRHYDDAAGVRHYVTEIIGEQILMLDKKTGETL
MRGLNKVALIGNLGKDPEVQVLEGNVPVAKFSLATSESYRDKTGQLHTSTDWHTVVLWRGLAELAQAYLRKGSLVYVEGK
LKNRHYDDAAGVRHYVTEIIGEQILMLDKKTGETL
Nucleotide
Download Length: 348 bp
>NTDB_id=133924 PK28_RS11605 WP_044514026.1 2710387..2710734(-) (ssb) [Hymenobacter sp. DG25B]
ATGCGCGGCCTCAACAAAGTAGCGCTTATCGGCAACCTGGGTAAAGACCCCGAAGTGCAGGTACTGGAGGGAAACGTGCC
GGTAGCCAAATTCTCCCTGGCTACATCCGAGAGCTACCGCGACAAAACCGGCCAGCTGCATACCAGCACCGACTGGCACA
CCGTAGTACTCTGGCGCGGGCTGGCCGAGTTGGCTCAGGCCTACCTGCGCAAAGGCAGCCTGGTGTATGTAGAGGGTAAA
CTAAAAAACCGGCATTATGATGATGCCGCCGGCGTGCGCCACTATGTGACCGAAATAATAGGCGAACAAATCCTGATGCT
CGACAAAAAAACCGGCGAAACCCTGTAA
ATGCGCGGCCTCAACAAAGTAGCGCTTATCGGCAACCTGGGTAAAGACCCCGAAGTGCAGGTACTGGAGGGAAACGTGCC
GGTAGCCAAATTCTCCCTGGCTACATCCGAGAGCTACCGCGACAAAACCGGCCAGCTGCATACCAGCACCGACTGGCACA
CCGTAGTACTCTGGCGCGGGCTGGCCGAGTTGGCTCAGGCCTACCTGCGCAAAGGCAGCCTGGTGTATGTAGAGGGTAAA
CTAAAAAACCGGCATTATGATGATGCCGCCGGCGTGCGCCACTATGTGACCGAAATAATAGGCGAACAAATCCTGATGCT
CGACAAAAAAACCGGCGAAACCCTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
50 |
97.391 |
0.487 |
| ssb | Vibrio cholerae strain A1552 |
52 |
86.957 |
0.452 |
| ssb | Neisseria meningitidis MC58 |
44.231 |
90.435 |
0.4 |
| ssb | Neisseria gonorrhoeae MS11 |
44.231 |
90.435 |
0.4 |