Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QU35_RS21150 | Genome accession | NZ_CP010052 |
| Coordinates | 4198899..4199417 (-) | Length | 172 a.a. |
| NCBI ID | WP_003219228.1 | Uniprot ID | A0A063XE16 |
| Organism | Bacillus subtilis subsp. subtilis str. 168 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 4173127..4199745 | 4198899..4199417 | within | 0 |
Gene organization within MGE regions
Location: 4173127..4199745
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QU35_RS20995 (QU35_21940) | yybN | 4173127..4173564 (+) | 438 | WP_009968442.1 | DUF2712 domain-containing protein | - |
| QU35_RS21000 (QU35_21945) | yybM | 4173678..4174433 (+) | 756 | WP_003244187.1 | DUF2705 family protein | - |
| QU35_RS21005 (QU35_21950) | yybL | 4174423..4175133 (+) | 711 | WP_003243512.1 | WxPxxD family membrane protein | - |
| QU35_RS21010 (QU35_21955) | yybK | 4175130..4175885 (+) | 756 | WP_003243304.1 | DUF2705 family protein | - |
| QU35_RS21015 (QU35_21960) | yybJ | 4175882..4176538 (+) | 657 | WP_003243153.1 | ATP-binding cassette domain-containing protein | - |
| QU35_RS22655 | - | 4176690..4176867 (+) | 178 | Protein_4260 | MFS transporter | - |
| QU35_RS21020 (QU35_21965) | - | 4176913..4177701 (-) | 789 | WP_003244492.1 | hypothetical protein | - |
| QU35_RS21025 (QU35_21970) | yybH | 4177769..4178158 (-) | 390 | WP_003243451.1 | nuclear transport factor 2 family protein | - |
| QU35_RS21030 (QU35_21975) | yybG | 4178304..4179143 (+) | 840 | WP_003244562.1 | pentapeptide repeat-containing protein | - |
| QU35_RS21035 (QU35_21980) | yybF | 4179176..4180390 (-) | 1215 | WP_003243239.1 | MFS transporter | - |
| QU35_RS21040 (QU35_21985) | yybE | 4180577..4181455 (+) | 879 | WP_003242958.1 | LysR family transcriptional regulator | - |
| QU35_RS21045 (QU35_21990) | yybD | 4181469..4181912 (+) | 444 | WP_003226881.1 | GNAT family N-acetyltransferase | - |
| QU35_RS21050 (QU35_21995) | yybC | 4181995..4182474 (+) | 480 | WP_003243923.1 | hypothetical protein | - |
| QU35_RS22850 | - | 4182499..4182632 (-) | 134 | Protein_4268 | LysR family transcriptional regulator | - |
| QU35_RS21055 (QU35_22000) | yybB | 4182649..4183311 (-) | 663 | WP_003226877.1 | MBL fold metallo-hydrolase | - |
| QU35_RS21060 (QU35_22005) | yybA | 4183458..4183910 (-) | 453 | WP_003226875.1 | MarR family transcriptional regulator | - |
| QU35_RS21065 (QU35_22010) | yyaT | 4184030..4184476 (+) | 447 | WP_003243577.1 | GNAT family N-acetyltransferase | - |
| QU35_RS21070 (QU35_22015) | yyaS | 4184473..4185078 (+) | 606 | WP_003244154.1 | YitT family protein | - |
| QU35_RS21075 (QU35_22020) | satA | 4185173..4185694 (-) | 522 | WP_003242546.1 | streptothricin N-acetyltransferase SatA | - |
| QU35_RS21080 (QU35_22025) | yyaQ | 4186105..4186461 (+) | 357 | WP_003244448.1 | MmcQ/YjbR family DNA-binding protein | - |
| QU35_RS21085 (QU35_22030) | yyaP | 4186621..4187187 (+) | 567 | WP_003243497.1 | dihydrofolate reductase family protein | - |
| QU35_RS22315 | - | 4187429..4187591 (+) | 163 | Protein_4276 | DUF255 domain-containing protein | - |
| QU35_RS21090 (QU35_22035) | tet(L) | 4187694..4189070 (-) | 1377 | WP_003242953.1 | tetracycline efflux MFS transporter Tet(L) | - |
| QU35_RS22915 | tetL | 4189104..4189166 (-) | 63 | WP_010886645.1 | tetracycline resistance efflux system leader peptide | - |
| QU35_RS21095 (QU35_22040) | yyaO | 4189419..4189658 (+) | 240 | WP_003243894.1 | DUF255 domain-containing protein | - |
| QU35_RS21100 (QU35_22045) | yyaN | 4189809..4190225 (+) | 417 | WP_010886646.1 | MerR family transcriptional regulator | - |
| QU35_RS21105 (QU35_22050) | yyaM | 4190222..4191139 (+) | 918 | WP_003242776.1 | EamA family transporter | - |
| QU35_RS21110 (QU35_22055) | yyaL | 4191211..4193280 (+) | 2070 | WP_009968448.1 | thioredoxin domain-containing protein | - |
| QU35_RS21115 (QU35_22060) | yyaK | 4193277..4194176 (-) | 900 | WP_003244361.1 | type II CAAX endopeptidase family protein | - |
| QU35_RS21120 (QU35_22065) | yyaJ | 4194402..4195757 (+) | 1356 | WP_003243011.1 | MFS transporter | - |
| QU35_RS21125 (QU35_22070) | maa | 4195791..4196345 (-) | 555 | WP_003242928.1 | sugar O-acetyltransferase | - |
| QU35_RS21130 (QU35_22075) | yyaH | 4196363..4196743 (-) | 381 | WP_003244460.1 | VOC family protein | - |
| QU35_RS21135 (QU35_22080) | ccpB | 4196799..4197734 (-) | 936 | WP_003243573.1 | transcriptional regulator CcpB | - |
| QU35_RS21140 (QU35_22085) | xth | 4197793..4198551 (-) | 759 | WP_003243194.1 | exodeoxyribonuclease III | - |
| QU35_RS21145 (QU35_22090) | rpsR | 4198616..4198855 (-) | 240 | WP_003219224.1 | 30S ribosomal protein S18 | - |
| QU35_RS21150 (QU35_22095) | ssbA | 4198899..4199417 (-) | 519 | WP_003219228.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
| QU35_RS21155 (QU35_22100) | rpsF | 4199458..4199745 (-) | 288 | WP_003244064.1 | 30S ribosomal protein S6 | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18742.31 Da Isoelectric Point: 4.7621
>NTDB_id=133830 QU35_RS21150 WP_003219228.1 4198899..4199417(-) (ssbA) [Bacillus subtilis subsp. subtilis str. 168]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=133830 QU35_RS21150 WP_003219228.1 4198899..4199417(-) (ssbA) [Bacillus subtilis subsp. subtilis str. 168]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.192 |
100 |
0.599 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
61.628 |
0.395 |
| ssb | Glaesserella parasuis strain SC1401 |
35.519 |
100 |
0.378 |