Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   AMD29_RS02200 Genome accession   NZ_CP012419
Coordinates   372117..372782 (+) Length   221 a.a.
NCBI ID   WP_000128297.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SG-M1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 367117..377782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD29_RS02175 (AMD29_02170) - 367135..367803 (+) 669 WP_000394891.1 fructose-6-phosphate aldolase -
  AMD29_RS02180 (AMD29_02175) - 367871..368959 (+) 1089 WP_000862118.1 glycerol dehydrogenase -
  AMD29_RS02185 (AMD29_02180) cysK 369111..370037 (-) 927 WP_000036948.1 cysteine synthase A -
  AMD29_RS02190 (AMD29_02185) - 370128..370772 (-) 645 WP_001108147.1 YigZ family protein -
  AMD29_RS02195 (AMD29_02190) comFA/cflA 370828..372117 (+) 1290 WP_000432961.1 DEAD/DEAH box helicase Machinery gene
  AMD29_RS02200 (AMD29_02195) comFC/cflB 372117..372782 (+) 666 WP_000128297.1 ComF family protein Machinery gene
  AMD29_RS02205 (AMD29_02200) hpf 372859..373413 (+) 555 WP_000599094.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25460.68 Da        Isoelectric Point: 9.3073

>NTDB_id=133630 AMD29_RS02200 WP_000128297.1 372117..372782(+) (comFC/cflB) [Streptococcus agalactiae strain SG-M1]
MTCLLCHEIDLSQLTFVELMLLKPKQNVICQTCKGSFEALSREMGCQTCCKQIPQKQCQDCIYWGKKGIEVNHFSLYRYN
EAMKKYFSLFKFQGDYLLKDVFTKEIKAALKKYKGYTIVPVPLSHEGYQNRQFNQVIAFLQSANIPYKNILSKKDGGKQS
ANNKEERLKQVQQFTLKNEAELGDNLLIVDDIYTTGATIAQIRKLLEEKGIKNIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=133630 AMD29_RS02200 WP_000128297.1 372117..372782(+) (comFC/cflB) [Streptococcus agalactiae strain SG-M1]
ATGACTTGTTTGTTATGTCATGAAATAGATTTATCGCAATTAACTTTTGTGGAACTTATGCTTCTAAAACCAAAGCAAAA
CGTAATTTGTCAAACGTGCAAGGGTAGTTTTGAAGCACTTAGTAGGGAGATGGGTTGCCAAACATGTTGCAAGCAAATTC
CCCAAAAACAATGTCAAGATTGTATTTATTGGGGTAAAAAAGGTATAGAGGTAAATCATTTTTCCCTTTATAGATACAAT
GAAGCAATGAAAAAATATTTTTCTCTTTTTAAATTTCAAGGGGATTATTTGTTGAAAGATGTTTTTACAAAAGAAATAAA
AGCTGCTCTAAAAAAGTATAAGGGCTACACTATAGTGCCAGTTCCCTTGAGTCATGAAGGATACCAAAATAGGCAATTTA
ATCAAGTGATTGCTTTTCTACAATCGGCAAATATACCTTACAAAAATATTCTTTCTAAAAAAGATGGAGGTAAGCAATCG
GCTAATAATAAAGAAGAAAGACTCAAACAAGTTCAGCAATTTACATTAAAAAATGAGGCTGAGTTAGGGGACAACCTTTT
AATTGTTGATGATATTTATACAACAGGCGCAACAATAGCACAAATCAGGAAACTATTAGAAGAAAAAGGTATAAAAAATA
TAAAAAGTTTTTCATTAGCACGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

42.986

100

0.43
  comFC/cflB Streptococcus pneumoniae Rx1

42.534

100

0.425
  comFC/cflB Streptococcus pneumoniae D39

42.534

100

0.425
  comFC/cflB Streptococcus pneumoniae R6

42.534

100

0.425
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416