Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | QF06_RS10495 | Genome accession | NZ_CP010014 |
| Coordinates | 2159287..2159622 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus sp. YP1 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2154287..2164622
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QF06_RS10475 (QF06_10475) | gcvT | 2154880..2155968 (-) | 1089 | WP_041850013.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| QF06_RS10480 (QF06_10480) | - | 2156409..2158082 (+) | 1674 | WP_041850014.1 | SNF2-related protein | - |
| QF06_RS10485 (QF06_10485) | - | 2158103..2158897 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| QF06_RS10490 (QF06_10490) | sinI | 2159080..2159253 (+) | 174 | WP_003230187.1 | anti-repressor SinI family protein | Regulator |
| QF06_RS10495 (QF06_10495) | sinR | 2159287..2159622 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| QF06_RS10500 (QF06_10500) | tasA | 2159715..2160500 (-) | 786 | WP_015251717.1 | biofilm matrix protein TasA | - |
| QF06_RS10505 (QF06_10505) | - | 2160564..2161136 (-) | 573 | WP_003246088.1 | signal peptidase I | - |
| QF06_RS10510 (QF06_10510) | tapA | 2161120..2161881 (-) | 762 | WP_015251716.1 | amyloid fiber anchoring/assembly protein TapA | - |
| QF06_RS10515 (QF06_10515) | - | 2162153..2162479 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| QF06_RS10520 (QF06_10520) | - | 2162521..2162700 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| QF06_RS10525 (QF06_10525) | comGG | 2162771..2163145 (-) | 375 | WP_015251714.1 | ComG operon protein ComGG | Machinery gene |
| QF06_RS10530 (QF06_10530) | comGF | 2163146..2163529 (-) | 384 | WP_041850015.1 | ComG operon protein ComGF | Machinery gene |
| QF06_RS10535 (QF06_10535) | comGE | 2163555..2163902 (-) | 348 | WP_003230165.1 | ComG operon protein 5 | Machinery gene |
| QF06_RS10540 (QF06_10540) | comGD | 2163886..2164317 (-) | 432 | WP_004398628.1 | comG operon protein ComGD | Machinery gene |
| QF06_RS10545 (QF06_10545) | comGC | 2164307..2164603 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=133562 QF06_RS10495 WP_003226345.1 2159287..2159622(+) (sinR) [Bacillus sp. YP1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=133562 QF06_RS10495 WP_003226345.1 2159287..2159622(+) (sinR) [Bacillus sp. YP1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |