Detailed information
Bioinformatically predicted
Overview
| Name | comGF | Type | Machinery gene |
| Locus tag | QF06_RS10530 | Genome accession | NZ_CP010014 |
| Coordinates | 2163146..2163529 (-) | Length | 127 a.a. |
| NCBI ID | WP_041850015.1 | Uniprot ID | - |
| Organism | Bacillus sp. YP1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2158146..2168529
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QF06_RS10490 (QF06_10490) | sinI | 2159080..2159253 (+) | 174 | WP_003230187.1 | anti-repressor SinI family protein | Regulator |
| QF06_RS10495 (QF06_10495) | sinR | 2159287..2159622 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| QF06_RS10500 (QF06_10500) | tasA | 2159715..2160500 (-) | 786 | WP_015251717.1 | biofilm matrix protein TasA | - |
| QF06_RS10505 (QF06_10505) | - | 2160564..2161136 (-) | 573 | WP_003246088.1 | signal peptidase I | - |
| QF06_RS10510 (QF06_10510) | tapA | 2161120..2161881 (-) | 762 | WP_015251716.1 | amyloid fiber anchoring/assembly protein TapA | - |
| QF06_RS10515 (QF06_10515) | - | 2162153..2162479 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| QF06_RS10520 (QF06_10520) | - | 2162521..2162700 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| QF06_RS10525 (QF06_10525) | comGG | 2162771..2163145 (-) | 375 | WP_015251714.1 | ComG operon protein ComGG | Machinery gene |
| QF06_RS10530 (QF06_10530) | comGF | 2163146..2163529 (-) | 384 | WP_041850015.1 | ComG operon protein ComGF | Machinery gene |
| QF06_RS10535 (QF06_10535) | comGE | 2163555..2163902 (-) | 348 | WP_003230165.1 | ComG operon protein 5 | Machinery gene |
| QF06_RS10540 (QF06_10540) | comGD | 2163886..2164317 (-) | 432 | WP_004398628.1 | comG operon protein ComGD | Machinery gene |
| QF06_RS10545 (QF06_10545) | comGC | 2164307..2164603 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
| QF06_RS10550 (QF06_10550) | comGB | 2164617..2165654 (-) | 1038 | WP_041850016.1 | comG operon protein ComGB | Machinery gene |
| QF06_RS10555 (QF06_10555) | comGA | 2165641..2166711 (-) | 1071 | WP_004399124.1 | competence protein ComGA | Machinery gene |
| QF06_RS10560 (QF06_10560) | corA | 2167122..2168075 (-) | 954 | WP_029317911.1 | magnesium transporter CorA | - |
Sequence
Protein
Download Length: 127 a.a. Molecular weight: 14250.41 Da Isoelectric Point: 6.4838
>NTDB_id=133564 QF06_RS10530 WP_041850015.1 2163146..2163529(-) (comGF) [Bacillus sp. YP1]
MLISGSLAAIIHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYHSMIRKRVDG
KGHVPILDHIAAMKADIKNGVVLLKIESEDQKVYQTAFPVYSYLGGG
MLISGSLAAIIHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYHSMIRKRVDG
KGHVPILDHIAAMKADIKNGVVLLKIESEDQKVYQTAFPVYSYLGGG
Nucleotide
Download Length: 384 bp
>NTDB_id=133564 QF06_RS10530 WP_041850015.1 2163146..2163529(-) (comGF) [Bacillus sp. YP1]
TTGCTCATATCAGGATCGTTAGCTGCGATTATCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
AGAATGGATGATTTCTATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGACAAGACATCCGTTTTGACATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTGCTGCCATGAAAGCTGATATTAAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACAGCTTTTCCGGTCTATTCGTATTTAGGAGGAGGGTGA
TTGCTCATATCAGGATCGTTAGCTGCGATTATCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
AGAATGGATGATTTCTATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGACAAGACATCCGTTTTGACATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTGCTGCCATGAAAGCTGATATTAAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACAGCTTTTCCGGTCTATTCGTATTTAGGAGGAGGGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGF | Bacillus subtilis subsp. subtilis str. 168 |
98.425 |
100 |
0.984 |