Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QF06_RS10540 Genome accession   NZ_CP010014
Coordinates   2163886..2164317 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus sp. YP1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2158886..2169317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF06_RS10490 (QF06_10490) sinI 2159080..2159253 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  QF06_RS10495 (QF06_10495) sinR 2159287..2159622 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  QF06_RS10500 (QF06_10500) tasA 2159715..2160500 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  QF06_RS10505 (QF06_10505) - 2160564..2161136 (-) 573 WP_003246088.1 signal peptidase I -
  QF06_RS10510 (QF06_10510) tapA 2161120..2161881 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  QF06_RS10515 (QF06_10515) - 2162153..2162479 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  QF06_RS10520 (QF06_10520) - 2162521..2162700 (-) 180 WP_003230176.1 YqzE family protein -
  QF06_RS10525 (QF06_10525) comGG 2162771..2163145 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  QF06_RS10530 (QF06_10530) comGF 2163146..2163529 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  QF06_RS10535 (QF06_10535) comGE 2163555..2163902 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  QF06_RS10540 (QF06_10540) comGD 2163886..2164317 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  QF06_RS10545 (QF06_10545) comGC 2164307..2164603 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  QF06_RS10550 (QF06_10550) comGB 2164617..2165654 (-) 1038 WP_041850016.1 comG operon protein ComGB Machinery gene
  QF06_RS10555 (QF06_10555) comGA 2165641..2166711 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  QF06_RS10560 (QF06_10560) corA 2167122..2168075 (-) 954 WP_029317911.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=133566 QF06_RS10540 WP_004398628.1 2163886..2164317(-) (comGD) [Bacillus sp. YP1]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=133566 QF06_RS10540 WP_004398628.1 2163886..2164317(-) (comGD) [Bacillus sp. YP1]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment