Detailed information NTG0133379

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: DE8669_RS08315
• Genome accession: NZ_CP012391
• Coordinates: 1651404..1652435 (-)
• Length: 343 a.a.
• NCBI ID: WP_002235823.1
• Uniprot ID: Q9JUB0
• Organism: Neisseria meningitidis strain DE8669
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1646404..1657435

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DE8669_RS08290 (DE8669_1557)	-	1647630..1648244 (+)	615	WP_015815602.1	molybdenum cofactor guanylyltransferase	-
DE8669_RS08295 (DE8669_1558)	-	1648407..1649024 (+)	618	WP_002217135.1	riboflavin synthase	-
DE8669_RS08300 (DE8669_1559)	-	1649032..1649895 (+)	864	WP_002243531.1	ATP-binding protein	-
DE8669_RS08305 (DE8669_1560)	-	1649908..1650342 (-)	435	WP_002213489.1	Spy/CpxP family protein refolding chaperone	-
DE8669_RS08310 (DE8669_1561)	rpe	1650653..1651381 (+)	729	WP_002213492.1	ribulose-phosphate 3-epimerase	-
DE8669_RS08315 (DE8669_1562)	ruvB	1651404..1652435 (-)	1032	WP_002235823.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
DE8669_RS08320 (DE8669_1563)	-	1652517..1652825 (-)	309	WP_002232489.1	hypothetical protein	-
DE8669_RS08325 (DE8669_1564)	-	1653048..1654301 (-)	1254	WP_014581064.1	multifunctional CCA addition/repair protein	-
DE8669_RS08330 (DE8669_1565)	-	1654386..1656014 (-)	1629	WP_014582436.1	ABC-F family ATPase	-
DE8669_RS08335 (DE8669_1566)	-	1656164..1656538 (+)	375	WP_002223750.1	arsenate reductase	-

Sequence

Protein

• Length: 343 a.a.
• Molecular weight: 37666.18 Da
• Isoelectric Point: 5.2966

>NTDB_id=133379 DE8669_RS08315 WP_002235823.1 1651404..1652435(-) (ruvB) [Neisseria meningitidis strain DE8669]
MLQTDNLTAAQPQRIVAAQTASAQEELLERALRPKTLDDYIGQHKAKEQLAIFIQAAKKRGEALDHVLLFGPPGLGKTTL
AHIIAKELGVNLRQTSGPVLERAGDLAALLTNLDPHDVLFIDEIHRLSPVVEEILYPALEDYRLDIMIGEGPAARSVKID
LPPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYENRDLATIVSRSAQLLQLDMSEEGAEEIAKRSRGTPRIANRLLRRVR
DFADVKNNGTIDGGIADAALSMLDVDVQGLDVMDRKFLEAVLHKFGGGPVGLDNVAAAIGESTDTIEDVIEPYLIQQGFL
QRTPRGRMATERAYLHFGLPVEK

Nucleotide

• Length: 1032 bp

>NTDB_id=133379 DE8669_RS08315 WP_002235823.1 1651404..1652435(-) (ruvB) [Neisseria meningitidis strain DE8669]
ATGCTGCAAACCGACAACCTGACTGCCGCTCAACCGCAACGCATTGTTGCCGCCCAAACCGCCTCCGCACAGGAAGAACT
GCTCGAACGCGCCCTCCGCCCCAAAACGCTGGACGACTATATCGGGCAGCATAAAGCCAAAGAACAGCTCGCCATTTTCA
TCCAAGCCGCCAAAAAACGCGGCGAAGCACTCGACCACGTTTTGCTCTTCGGCCCGCCCGGACTGGGTAAAACCACACTG
GCGCACATCATCGCCAAAGAATTGGGCGTAAATTTGCGCCAAACCAGCGGCCCCGTCCTCGAACGCGCCGGCGATCTCGC
CGCCCTTTTGACCAACCTTGATCCGCACGACGTATTGTTTATCGACGAAATCCACCGCCTCAGCCCTGTTGTCGAAGAAA
TCCTCTACCCCGCGCTTGAAGACTACCGGCTCGACATTATGATAGGCGAAGGGCCCGCCGCCCGTTCCGTTAAAATCGAC
CTGCCGCCCTTCACGCTTGTCGGCGCGACCACCCGCGCCGGTATGCTGACCAATCCGTTGCGCGACCGCTTCGGCATCGT
CTCCCGCCTCGAGTTTTACGAAAACCGCGACCTTGCCACCATCGTCAGCCGTTCGGCACAACTCCTGCAACTCGATATGT
CCGAAGAAGGCGCGGAAGAAATCGCCAAACGCAGCCGCGGTACGCCGCGCATCGCCAACCGCCTGTTGCGCCGCGTGCGC
GATTTCGCCGACGTGAAAAACAACGGCACAATCGACGGCGGCATCGCCGATGCCGCTTTAAGTATGCTGGACGTGGACGT
GCAGGGGCTGGACGTGATGGACAGGAAATTCCTCGAAGCCGTTTTGCACAAATTCGGCGGCGGCCCGGTCGGTTTGGACA
ATGTTGCCGCCGCCATCGGCGAATCAACAGACACCATCGAAGACGTTATCGAACCCTACCTTATCCAACAAGGCTTCCTG
CAACGCACCCCGCGCGGCAGGATGGCGACCGAACGCGCCTACCTGCATTTCGGGCTGCCCGTCGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (268-337)

• RuvB AAA lid domain (AAA_lid_4) (193-266)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (32-190)

3D structure

• AlphaFold DB: Q9JUB0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.468	95.335	0.586
ruvB	Streptococcus pneumoniae TIGR4	62.42	91.545	0.571
ruvB	Streptococcus pneumoniae R6	62.42	91.545	0.571
ruvB	Streptococcus pneumoniae D39	62.42	91.545	0.571
ruvB	Helicobacter pylori 26695	57.508	91.254	0.525
ruvB	Synechocystis sp. PCC 6803	54.878	95.627	0.525