Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PN96_RS00305 Genome accession   NZ_CP009977
Coordinates   66329..66868 (+) Length   179 a.a.
NCBI ID   WP_014233117.1    Uniprot ID   A0AAN1CWJ2
Organism   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 61329..71868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PN96_RS00290 (PN96_00285) uvrA 61384..64206 (-) 2823 WP_020334520.1 excinuclease ABC subunit UvrA -
  PN96_RS00295 (PN96_00290) galU 64355..65227 (-) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PN96_RS00300 (PN96_00295) qstR 65407..66051 (-) 645 WP_020334518.1 LuxR C-terminal-related transcriptional regulator Regulator
  PN96_RS00305 (PN96_00300) ssb 66329..66868 (+) 540 WP_014233117.1 single-stranded DNA-binding protein Machinery gene
  PN96_RS00310 (PN96_00305) csrD 67106..69115 (+) 2010 WP_031334688.1 RNase E specificity factor CsrD -
  PN96_RS00315 (PN96_00310) - 69127..70572 (+) 1446 WP_020334516.1 hypothetical protein -
  PN96_RS00320 (PN96_00315) gspM 70569..71219 (+) 651 WP_020334515.1 type II secretion system protein GspM -
  PN96_RS00325 (PN96_00320) - 71212..71544 (+) 333 WP_020334514.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19685.83 Da        Isoelectric Point: 5.2257

>NTDB_id=133308 PN96_RS00305 WP_014233117.1 66329..66868(+) (ssb) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQAPQQGGWGQPQQPAQPQYNAPQQQAPKQSAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=133308 PN96_RS00305 WP_014233117.1 66329..66868(+) (ssb) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAACCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCAACCTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACTG
AGTGGCACCGAGTTGTGCTGTTTGGCAAACTTGCGGAAGTTGCTGGCGAATACCTACGTAAAGGCTCACAAGTTTACGTT
GAAGGACAACTTCAAACGCGTAAATGGCAAGATCAGAGTGGTCAAGACCGTTACTCAACTGAAGTTGTGGTTCAGGGCTT
CAATGGCGTAATGCAAATGCTGGGTGGTCGCGCTCAAGGTGGCGCTCCTGCTATGGGTGGCCAGGCACCTCAGCAAGGTG
GTTGGGGTCAGCCTCAGCAACCAGCTCAGCCGCAATACAATGCGCCTCAGCAACAAGCTCCAAAGCAATCGGCTCCACAA
CAGCCTCAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.598
  ssb Neisseria meningitidis MC58

46.667

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.469

Multiple sequence alignment