Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LT85_RS02370 Genome accession   NZ_CP009962
Coordinates   554107..554601 (+) Length   164 a.a.
NCBI ID   WP_038484803.1    Uniprot ID   A0A0A1F9V4
Organism   Collimonas arenae strain Cal35     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 543133..558125 554107..554601 within 0


Gene organization within MGE regions


Location: 543133..558125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT85_RS02335 - 544412..545245 (+) 834 WP_038484788.1 CPBP family intramembrane glutamic endopeptidase -
  LT85_RS02340 (LT85_0466) - 545397..547505 (+) 2109 WP_253273647.1 peptidase domain-containing ABC transporter -
  LT85_RS27050 (LT85_0467) - 547763..547966 (-) 204 WP_253273648.1 hypothetical protein -
  LT85_RS27455 - 548001..548249 (-) 249 Protein_468 YXWGXW repeat-containing protein -
  LT85_RS02350 - 548484..549836 (-) 1353 WP_038484794.1 ATP-binding protein -
  LT85_RS02355 (LT85_0470) - 550285..552192 (-) 1908 WP_052134566.1 protease pro-enzyme activation domain-containing protein -
  LT85_RS02365 (LT85_0471) - 552721..554040 (+) 1320 WP_081991947.1 MFS transporter -
  LT85_RS02370 (LT85_0472) ssb 554107..554601 (+) 495 WP_038484803.1 single-stranded DNA-binding protein Machinery gene
  LT85_RS02375 - 554973..555578 (-) 606 WP_038484805.1 hypothetical protein -
  LT85_RS02380 (LT85_0474) - 555707..555904 (+) 198 WP_038484808.1 YqaE/Pmp3 family membrane protein -
  LT85_RS02385 - 556110..557069 (-) 960 Protein_475 IS5 family transposase -
  LT85_RS27055 (LT85_0477) - 557493..558125 (+) 633 WP_052134568.1 toxin co-regulated pilus biosynthesis Q family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18030.07 Da        Isoelectric Point: 7.0169

>NTDB_id=133186 LT85_RS02370 WP_038484803.1 554107..554601(+) (ssb) [Collimonas arenae strain Cal35]
MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNSGEKKELTEWHRITFYRKLAEIAGQYLKKGSQIYIEG
RLQTRKWQDKDGAERYTTEIIADTMQMLGSRQGQGGSASMDDGGYSSAPPARQNTSAPAAQASRPAPASRPAPNFSDMDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=133186 LT85_RS02370 WP_038484803.1 554107..554601(+) (ssb) [Collimonas arenae strain Cal35]
ATGGCATCGGTCAATAAAGTCATCATCGTCGGCAATCTCGGCCGCGATCCGGAAACGCGCTATATGCCAAACGGTGAAGC
AGTCACCAACATTGCCGTTGCCACGACGGAAAGCTGGAAAGACAAGAACAGCGGCGAGAAAAAAGAATTAACCGAATGGC
ACCGCATCACGTTCTACCGCAAATTGGCAGAGATCGCCGGACAATACCTGAAAAAGGGTTCGCAGATCTACATCGAAGGC
CGTCTGCAGACACGCAAATGGCAAGACAAGGATGGCGCCGAGCGTTACACCACCGAAATCATCGCCGACACCATGCAAAT
GCTGGGCAGCCGTCAAGGCCAGGGCGGTAGCGCCTCCATGGACGACGGCGGCTACAGCAGCGCGCCGCCGGCTCGCCAGA
ACACCAGCGCACCTGCTGCTCAAGCCTCCCGTCCGGCACCGGCGTCGCGCCCGGCGCCGAATTTCTCGGATATGGATGAC
GATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A1F9V4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.591

100

0.591
  ssb Neisseria gonorrhoeae MS11

53.672

100

0.579
  ssb Glaesserella parasuis strain SC1401

52.222

100

0.573
  ssb Neisseria meningitidis MC58

53.107

100

0.573

Multiple sequence alignment