Detailed information NTG0132842

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: AEI14_RS06810
• Genome accession: NZ_CP012241
• Coordinates: 1289276..1290283 (+)
• Length: 335 a.a.
• NCBI ID: WP_002898696.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain CJ065CC48
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1284276..1295283

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AEI14_RS08770 (AEI14_06820)	-	1285942..1286892 (-)	951	WP_002920334.1	autotransporter outer membrane beta-barrel domain-containing protein	-
AEI14_RS08775 (AEI14_06825)	-	1287082..1287603 (-)	522	WP_002799188.1	hypothetical protein	-
AEI14_RS08780 (AEI14_06830)	-	1287756..1288214 (-)	459	WP_002871965.1	hypothetical protein	-
AEI14_RS06805 (AEI14_06835)	-	1288775..1289185 (-)	411	WP_002783915.1	hypothetical protein	-
AEI14_RS06810 (AEI14_06840)	ruvB	1289276..1290283 (+)	1008	WP_002898696.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
AEI14_RS06815 (AEI14_06845)	amaA	1290287..1291330 (+)	1044	WP_002862038.1	AI-2E family transporter	-
AEI14_RS06820 (AEI14_06850)	fumC	1291360..1292751 (-)	1392	WP_002875258.1	class II fumarate hydratase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37295.85 Da
• Isoelectric Point: 4.9081

>NTDB_id=132842 AEI14_RS06810 WP_002898696.1 1289276..1290283(+) (ruvB) [Campylobacter jejuni strain CJ065CC48]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRILKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide

• Length: 1008 bp

>NTDB_id=132842 AEI14_RS06810 WP_002898696.1 1289276..1290283(+) (ruvB) [Campylobacter jejuni strain CJ065CC48]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATATCTTTATAGCTGCAGCCAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGGGATATACT
TTTTATCGATGAAATTCACCGCTTAAGCCCTGCTATCGAAGAAGTACTTTACCCCGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCCGCCCAAACCATAAAAATCGATTTACCAAAATTTACTCTCATAGGGGCTACAACACGT
GCAGGTATGCTTAGCAATCCTTTACGTGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
CCTCATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACCCCTAGAATAGCTCTAAGGATTTTAAAAAGAGTTAGAGATTTTGCCGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGGGCTAATGAGGCCTTAAATTCTTTAGGGGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCTAAGCAAAAACCTATCGGGCTTGCAAGTATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTATTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (255-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Helicobacter pylori 26695	69.162	99.701	0.69
ruvB	Bacillus subtilis subsp. subtilis str. 168	52.454	97.313	0.51
ruvB	Streptococcus pneumoniae TIGR4	48.328	98.209	0.475
ruvB	Streptococcus pneumoniae R6	48.328	98.209	0.475
ruvB	Streptococcus pneumoniae D39	48.328	98.209	0.475
ruvB	Synechocystis sp. PCC 6803	49.221	95.821	0.472