Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | FORC4_RS13740 | Genome accession | NZ_CP009847 |
| Coordinates | 2988281..2988874 (-) | Length | 197 a.a. |
| NCBI ID | WP_005480482.1 | Uniprot ID | Q87L64 |
| Organism | Vibrio parahaemolyticus strain FORC_004 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2983281..2993874
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC4_RS13720 (FORC4_2620) | aroB | 2984157..2985257 (-) | 1101 | WP_025546399.1 | 3-dehydroquinate synthase | - |
| FORC4_RS13725 (FORC4_2621) | aroK | 2985289..2985807 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| FORC4_RS13730 (FORC4_2622) | pilQ | 2985996..2987744 (-) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| FORC4_RS13735 (FORC4_2623) | pilP | 2987776..2988291 (-) | 516 | WP_005480477.1 | pilus assembly protein PilP | Machinery gene |
| FORC4_RS13740 (FORC4_2624) | pilO | 2988281..2988874 (-) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| FORC4_RS13745 (FORC4_2625) | pilN | 2988867..2989445 (-) | 579 | WP_005480484.1 | PilN domain-containing protein | Machinery gene |
| FORC4_RS13750 (FORC4_2626) | pilM | 2989429..2990445 (-) | 1017 | WP_043036352.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| FORC4_RS13755 (FORC4_2627) | - | 2990588..2993158 (+) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23091.63 Da Isoelectric Point: 4.8225
>NTDB_id=132570 FORC4_RS13740 WP_005480482.1 2988281..2988874(-) (pilO) [Vibrio parahaemolyticus strain FORC_004]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=132570 FORC4_RS13740 WP_005480482.1 2988281..2988874(-) (pilO) [Vibrio parahaemolyticus strain FORC_004]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTAGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAATTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CGCTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACATTGCCACGAATCATC
ACCTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTAGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAATTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CGCTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACATTGCCACGAATCATC
ACCTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
94.211 |
96.447 |
0.909 |
| pilO | Vibrio cholerae strain A1552 |
72.589 |
100 |
0.726 |