Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | FORC4_RS13745 | Genome accession | NZ_CP009847 |
| Coordinates | 2988867..2989445 (-) | Length | 192 a.a. |
| NCBI ID | WP_005480484.1 | Uniprot ID | Q87L63 |
| Organism | Vibrio parahaemolyticus strain FORC_004 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2983867..2994445
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC4_RS13720 (FORC4_2620) | aroB | 2984157..2985257 (-) | 1101 | WP_025546399.1 | 3-dehydroquinate synthase | - |
| FORC4_RS13725 (FORC4_2621) | aroK | 2985289..2985807 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| FORC4_RS13730 (FORC4_2622) | pilQ | 2985996..2987744 (-) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| FORC4_RS13735 (FORC4_2623) | pilP | 2987776..2988291 (-) | 516 | WP_005480477.1 | pilus assembly protein PilP | Machinery gene |
| FORC4_RS13740 (FORC4_2624) | pilO | 2988281..2988874 (-) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| FORC4_RS13745 (FORC4_2625) | pilN | 2988867..2989445 (-) | 579 | WP_005480484.1 | PilN domain-containing protein | Machinery gene |
| FORC4_RS13750 (FORC4_2626) | pilM | 2989429..2990445 (-) | 1017 | WP_043036352.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| FORC4_RS13755 (FORC4_2627) | - | 2990588..2993158 (+) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
| FORC4_RS13760 (FORC4_2628) | oxyR | 2993214..2994122 (-) | 909 | WP_005465160.1 | DNA-binding transcriptional regulator OxyR | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22438.91 Da Isoelectric Point: 6.6554
>NTDB_id=132571 FORC4_RS13745 WP_005480484.1 2988867..2989445(-) (pilN) [Vibrio parahaemolyticus strain FORC_004]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=132571 FORC4_RS13745 WP_005480484.1 2988867..2989445(-) (pilN) [Vibrio parahaemolyticus strain FORC_004]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTGGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTTATGTTTAACACGGTAGAAGAGCAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTGGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTTATGTTTAACACGGTAGAAGAGCAGAAAGA
GGGAAAACAACATGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.333 |
100 |
0.833 |
| pilN | Vibrio cholerae strain A1552 |
62.983 |
94.271 |
0.594 |