Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CH48_RS10515 | Genome accession | NZ_CP009838 |
| Coordinates | 2315385..2315933 (+) | Length | 182 a.a. |
| NCBI ID | WP_005165221.1 | Uniprot ID | A0A0E1NLP2 |
| Organism | Yersinia enterocolitica strain 2516-87 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2310385..2320933
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH48_RS10505 (CH48_2056) | - | 2311613..2311966 (+) | 354 | WP_005165225.1 | MmcQ/YjbR family DNA-binding protein | - |
| CH48_RS10510 (CH48_2057) | uvrA | 2312025..2314856 (-) | 2832 | WP_013650522.1 | excinuclease ABC subunit UvrA | - |
| CH48_RS10515 (CH48_2058) | ssb | 2315385..2315933 (+) | 549 | WP_005165221.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| CH48_RS10520 (CH48_2059) | - | 2316022..2317350 (-) | 1329 | WP_005165219.1 | type II toxin-antitoxin system HipA family toxin | - |
| CH48_RS10525 (CH48_2060) | - | 2317352..2317651 (-) | 300 | WP_005165217.1 | helix-turn-helix transcriptional regulator | - |
| CH48_RS10530 (CH48_2061) | - | 2317946..2318617 (+) | 672 | WP_013650521.1 | glutathione S-transferase family protein | - |
| CH48_RS10535 (CH48_2062) | - | 2318978..2320345 (+) | 1368 | WP_005165212.1 | NCS2 family permease | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 19084.10 Da Isoelectric Point: 4.9567
>NTDB_id=132490 CH48_RS10515 WP_005165221.1 2315385..2315933(+) (ssb) [Yersinia enterocolitica strain 2516-87]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGAPQDGGAQGGWGQPQQPQGGNQFSGGQTSRPAQS
APAAQPQGGNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGAPQDGGAQGGWGQPQQPQGGNQFSGGQTSRPAQS
APAAQPQGGNEPPMDFDDDIPF
Nucleotide
Download Length: 549 bp
>NTDB_id=132490 CH48_RS10515 WP_005165221.1 2315385..2315933(+) (ssb) [Yersinia enterocolitica strain 2516-87]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCTGTTGCCAATATCACCCTGGCCACTTCCGAAAGCTGGCGTGATAAAGCAACCGGCGAGCAGAAAGAAAAGACGG
AATGGCACCGTGTGGTGCTGTTTGGCAAACTAGCGGAAGTTGCTGGTGAATATTTGCGCAAAGGCTCTCAGGTCTATATC
GAAGGCGCATTGCAAACCCGTAAATGGACAGATCAGGCTGGTGTTGAGAAATACACCACTGAAGTTGTGGTTAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAAGGCGGTGGTGCTCCGGCGGGTGGTGGTGCACCACAAGACGGTGGCGCAC
AAGGCGGTTGGGGCCAGCCTCAGCAGCCACAAGGTGGCAACCAGTTCAGCGGTGGTCAAACTTCGCGCCCGGCTCAGTCA
GCACCAGCAGCACAACCACAAGGCGGCAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCTGTTGCCAATATCACCCTGGCCACTTCCGAAAGCTGGCGTGATAAAGCAACCGGCGAGCAGAAAGAAAAGACGG
AATGGCACCGTGTGGTGCTGTTTGGCAAACTAGCGGAAGTTGCTGGTGAATATTTGCGCAAAGGCTCTCAGGTCTATATC
GAAGGCGCATTGCAAACCCGTAAATGGACAGATCAGGCTGGTGTTGAGAAATACACCACTGAAGTTGTGGTTAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAAGGCGGTGGTGCTCCGGCGGGTGGTGGTGCACCACAAGACGGTGGCGCAC
AAGGCGGTTGGGGCCAGCCTCAGCAGCCACAAGGTGGCAACCAGTTCAGCGGTGGTCAAACTTCGCGCCCGGCTCAGTCA
GCACCAGCAGCACAACCACAAGGCGGCAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
73.913 |
100 |
0.747 |
| ssb | Glaesserella parasuis strain SC1401 |
55.729 |
100 |
0.588 |
| ssb | Neisseria gonorrhoeae MS11 |
46.809 |
100 |
0.484 |
| ssb | Neisseria meningitidis MC58 |
46.703 |
100 |
0.467 |