Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   XFC3_RS07905 Genome accession   NZ_CP009829
Coordinates   1702196..1702690 (-) Length   164 a.a.
NCBI ID   WP_004083791.1    Uniprot ID   Q9PDI7
Organism   Xylella fastidiosa strain 3124     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1697196..1707690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFC3_RS07890 (XFC3_07935) gloA 1697460..1697987 (+) 528 WP_010893902.1 lactoylglutathione lyase -
  XFC3_RS07895 (XFC3_07940) - 1698164..1699360 (-) 1197 WP_229716589.1 cation:proton antiporter -
  XFC3_RS07900 (XFC3_07945) - 1699671..1700582 (-) 912 WP_010893900.1 class I SAM-dependent methyltransferase -
  XFC3_RS07905 (XFC3_07950) ssb 1702196..1702690 (-) 495 WP_004083791.1 single-stranded DNA-binding protein Machinery gene
  XFC3_RS07910 (XFC3_07955) - 1702939..1703937 (+) 999 WP_010893895.1 polyprenyl synthetase family protein -
  XFC3_RS07915 (XFC3_07960) cyoA 1704401..1705360 (+) 960 WP_010893894.1 ubiquinol oxidase subunit II -
  XFC3_RS07920 (XFC3_07965) cyoB 1705354..1707351 (+) 1998 WP_031337912.1 cytochrome o ubiquinol oxidase subunit I -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18211.20 Da        Isoelectric Point: 5.9575

>NTDB_id=132458 XFC3_RS07905 WP_004083791.1 1702196..1702690(-) (ssb) [Xylella fastidiosa strain 3124]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQARQPSQSPQSSPPPMDDFADD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=132458 XFC3_RS07905 WP_004083791.1 1702196..1702690(-) (ssb) [Xylella fastidiosa strain 3124]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAACCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTGCGTAAGGACAAGGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATCCGCTATGACAAGTTCACTGGCCAGGATGGTCAGGAGCGCTATGTTACCGAGATCGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGCGATGGCGGTGGTATGGGCGGGGGCGGTGAGCGCCCGCAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGGCTCGGCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PDI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

100

0.53
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.5
  ssb Neisseria meningitidis MC58

41.618

100

0.439
  ssb Neisseria gonorrhoeae MS11

41.04

100

0.433

Multiple sequence alignment