Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OY18_RS05185 Genome accession   NZ_CP009823
Coordinates   1035111..1035605 (-) Length   164 a.a.
NCBI ID   WP_004083791.1    Uniprot ID   Q9PDI7
Organism   Xylella fastidiosa strain J1a12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1030111..1040605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OY18_RS05170 (OY18_04870) gloA 1030376..1030903 (+) 528 WP_010893902.1 lactoylglutathione lyase -
  OY18_RS05175 (OY18_04875) - 1031022..1032275 (-) 1254 WP_229926357.1 cation:proton antiporter -
  OY18_RS05180 (OY18_04880) - 1032586..1033497 (-) 912 WP_010893900.1 class I SAM-dependent methyltransferase -
  OY18_RS05185 (OY18_04885) ssb 1035111..1035605 (-) 495 WP_004083791.1 single-stranded DNA-binding protein Machinery gene
  OY18_RS05190 (OY18_04890) - 1035854..1036852 (+) 999 WP_023907801.1 polyprenyl synthetase family protein -
  OY18_RS05195 (OY18_04895) cyoA 1037316..1038275 (+) 960 WP_023907802.1 ubiquinol oxidase subunit II -
  OY18_RS05200 (OY18_04900) cyoB 1038269..1040266 (+) 1998 WP_060871860.1 cytochrome o ubiquinol oxidase subunit I -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18211.20 Da        Isoelectric Point: 5.9575

>NTDB_id=132421 OY18_RS05185 WP_004083791.1 1035111..1035605(-) (ssb) [Xylella fastidiosa strain J1a12]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQARQPSQSPQSSPPPMDDFADD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=132421 OY18_RS05185 WP_004083791.1 1035111..1035605(-) (ssb) [Xylella fastidiosa strain J1a12]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAACCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTGCGTAAGGACAAGGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATCCGCTATGACAAGTTCACTGGCCAGGATGGTCAGGAGCGCTATGTTACCGAGATCGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGCGATGGCGGTGGTATGGGCGGGGGCGGTGAGCGCCCGCAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGGCTCGGCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PDI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

100

0.53
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.5
  ssb Neisseria meningitidis MC58

41.618

100

0.439
  ssb Neisseria gonorrhoeae MS11

41.04

100

0.433

Multiple sequence alignment