Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   OB04_RS12350 Genome accession   NZ_CP009796
Coordinates   2397545..2398348 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SG6     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2392545..2403348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS12320 (OB04_02416) glpQB 2393684..2394415 (-) 732 WP_038429286.1 glycerophosphodiester phosphodiesterase -
  OB04_RS12325 (OB04_02417) yqiI 2394494..2395114 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  OB04_RS12330 (OB04_02418) - 2395134..2395430 (-) 297 WP_014480225.1 hypothetical protein -
  OB04_RS22270 - 2395738..2395890 (+) 153 WP_014480226.1 hypothetical protein -
  OB04_RS12340 (OB04_02419) yqiG 2395963..2397081 (+) 1119 WP_038429287.1 NADH-dependent flavin oxidoreductase -
  OB04_RS12350 (OB04_02420) spo0A 2397545..2398348 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  OB04_RS12360 (OB04_02421) spoIVB 2398624..2399904 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  OB04_RS12365 (OB04_02422) recN 2400079..2401809 (-) 1731 WP_029317928.1 DNA repair protein RecN Machinery gene
  OB04_RS12370 (OB04_02423) argR 2401846..2402295 (-) 450 WP_029317927.1 arginine repressor ArgR -
  OB04_RS12375 (OB04_02424) yqxC 2402393..2403238 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=132334 OB04_RS12350 WP_003226427.1 2397545..2398348(-) (spo0A) [Bacillus subtilis strain SG6]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=132334 OB04_RS12350 WP_003226427.1 2397545..2398348(-) (spo0A) [Bacillus subtilis strain SG6]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCAGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCTCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment