Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | OB04_RS12550 | Genome accession | NZ_CP009796 |
| Coordinates | 2432176..2432511 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain SG6 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2427176..2437511
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OB04_RS12530 (OB04_02455) | gcvT | 2427768..2428856 (-) | 1089 | WP_015714248.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| OB04_RS12535 (OB04_02456) | hepAA | 2429298..2430971 (+) | 1674 | WP_003230203.1 | SNF2-related protein | - |
| OB04_RS12540 (OB04_02457) | yqhG | 2430992..2431786 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| OB04_RS12545 (OB04_02458) | sinI | 2431969..2432142 (+) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| OB04_RS12550 (OB04_02459) | sinR | 2432176..2432511 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| OB04_RS12555 (OB04_02460) | tasA | 2432604..2433389 (-) | 786 | WP_014480250.1 | biofilm matrix protein TasA | - |
| OB04_RS12560 (OB04_02461) | sipW | 2433453..2434025 (-) | 573 | WP_003230181.1 | signal peptidase I SipW | - |
| OB04_RS12565 (OB04_02462) | tapA | 2434009..2434770 (-) | 762 | WP_015714251.1 | amyloid fiber anchoring/assembly protein TapA | - |
| OB04_RS12570 (OB04_02463) | yqzG | 2435042..2435368 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| OB04_RS12575 (OB04_02464) | spoIITA | 2435410..2435589 (-) | 180 | WP_014480252.1 | YqzE family protein | - |
| OB04_RS12580 (OB04_02465) | comGG | 2435660..2436034 (-) | 375 | WP_015714252.1 | ComG operon protein ComGG | Machinery gene |
| OB04_RS12585 | comGF | 2436035..2436418 (-) | 384 | WP_038429292.1 | ComG operon protein ComGF | Machinery gene |
| OB04_RS12590 (OB04_02467) | comGE | 2436444..2436791 (-) | 348 | WP_015714254.1 | ComG operon protein 5 | Machinery gene |
| OB04_RS12595 (OB04_02468) | comGD | 2436775..2437206 (-) | 432 | WP_014480256.1 | comG operon protein ComGD | Machinery gene |
| OB04_RS12600 (OB04_02469) | comGC | 2437196..2437492 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=132337 OB04_RS12550 WP_003226345.1 2432176..2432511(+) (sinR) [Bacillus subtilis strain SG6]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=132337 OB04_RS12550 WP_003226345.1 2432176..2432511(+) (sinR) [Bacillus subtilis strain SG6]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |