Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | XFUD_RS06300 | Genome accession | NZ_CP009790 |
| Coordinates | 1346182..1346676 (+) | Length | 164 a.a. |
| NCBI ID | WP_004083791.1 | Uniprot ID | Q9PDI7 |
| Organism | Xylella fastidiosa strain U24d | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1341182..1351676
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XFUD_RS06285 (XFUD_05845) | cyoB | 1341521..1343518 (-) | 1998 | WP_031337912.1 | cytochrome o ubiquinol oxidase subunit I | - |
| XFUD_RS06290 (XFUD_05850) | cyoA | 1343512..1344471 (-) | 960 | WP_010893894.1 | ubiquinol oxidase subunit II | - |
| XFUD_RS06295 (XFUD_05855) | - | 1344935..1345933 (-) | 999 | WP_010893895.1 | polyprenyl synthetase family protein | - |
| XFUD_RS06300 (XFUD_05860) | ssb | 1346182..1346676 (+) | 495 | WP_004083791.1 | single-stranded DNA-binding protein | Machinery gene |
| XFUD_RS06305 (XFUD_05865) | - | 1348290..1349201 (+) | 912 | WP_010893900.1 | class I SAM-dependent methyltransferase | - |
| XFUD_RS06310 (XFUD_05870) | - | 1349512..1350708 (+) | 1197 | WP_229716589.1 | cation:proton antiporter | - |
| XFUD_RS06315 (XFUD_05875) | gloA | 1350885..1351412 (-) | 528 | WP_010893902.1 | lactoylglutathione lyase | - |
Sequence
Protein
Download Length: 164 a.a. Molecular weight: 18211.20 Da Isoelectric Point: 5.9575
>NTDB_id=132255 XFUD_RS06300 WP_004083791.1 1346182..1346676(+) (ssb) [Xylella fastidiosa strain U24d]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQARQPSQSPQSSPPPMDDFADD
DIPF
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQARQPSQSPQSSPPPMDDFADD
DIPF
Nucleotide
Download Length: 495 bp
>NTDB_id=132255 XFUD_RS06300 WP_004083791.1 1346182..1346676(+) (ssb) [Xylella fastidiosa strain U24d]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAACCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTGCGTAAGGACAAGGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATCCGCTATGACAAGTTCACTGGCCAGGATGGTCAGGAGCGCTATGTTACCGAGATCGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGCGATGGCGGTGGTATGGGCGGGGGCGGTGAGCGCCCGCAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGGCTCGGCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAACCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTGCGTAAGGACAAGGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATCCGCTATGACAAGTTCACTGGCCAGGATGGTCAGGAGCGCTATGTTACCGAGATCGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGCGATGGCGGTGGTATGGGCGGGGGCGGTGAGCGCCCGCAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGGCTCGGCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
49.153 |
100 |
0.53 |
| ssb | Glaesserella parasuis strain SC1401 |
45.81 |
100 |
0.5 |
| ssb | Neisseria meningitidis MC58 |
41.618 |
100 |
0.439 |
| ssb | Neisseria gonorrhoeae MS11 |
41.04 |
100 |
0.433 |