Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   XFUD_RS01645 Genome accession   NZ_CP009790
Coordinates   378662..379720 (+) Length   352 a.a.
NCBI ID   WP_038200243.1    Uniprot ID   -
Organism   Xylella fastidiosa strain U24d     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 373662..384720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFUD_RS01635 (XFUD_01545) - 374723..375688 (+) 966 WP_031337540.1 aldo/keto reductase -
  XFUD_RS01640 (XFUD_01550) - 375992..378421 (-) 2430 WP_023906139.1 penicillin-binding protein 1A -
  XFUD_RS01645 (XFUD_01555) pilM 378662..379720 (+) 1059 WP_038200243.1 type IV pilus biogenesis protein PilM Machinery gene
  XFUD_RS01650 (XFUD_01560) - 379720..380280 (+) 561 Protein_286 PilN domain-containing protein -
  XFUD_RS01655 (XFUD_01565) - 380382..381050 (+) 669 WP_010892902.1 type 4a pilus biogenesis protein PilO -
  XFUD_RS01660 (XFUD_01570) - 381047..381577 (+) 531 WP_010892903.1 pilus assembly protein PilP -
  XFUD_RS01665 (XFUD_01575) - 381598..383490 (+) 1893 WP_171817040.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37615.25 Da        Isoelectric Point: 4.6541

>NTDB_id=132250 XFUD_RS01645 WP_038200243.1 378662..379720(+) (pilM) [Xylella fastidiosa strain U24d]
MGLFSKKQSVLVGVDISSTAVKLLQLSRSGNRFKVEHYAVEPLPLNAVAERGIVEVEQVGEAIRRAVSRSGTKAKFAAAA
VAGSAVITKLIPMPVGLDEQDLEAQIEIEATNYIPYPIEEVSLDFEVLGPVPNNTEMVQVLLAASRSENVELRQSALELG
GLTAKVIDVEALAVENAFSLIAQELSVGSNALVALIDIGATMSTLNVLHSGRSLYTREQLFGGKQLTDEVMHRYGMTYEE
AGQAKRQGGLPQSYEVEVLGSFKDSVIQQISRLLQFFYAGSEYNRVDCIVLAGGCAVIAGLPAMVEERLGVVTVVANPLA
QMTLGAKVQAHTLAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=132250 XFUD_RS01645 WP_038200243.1 378662..379720(+) (pilM) [Xylella fastidiosa strain U24d]
GTGGGGCTTTTTTCCAAAAAACAGTCGGTATTGGTTGGTGTCGACATTAGTTCAACTGCAGTGAAGCTCTTACAGCTTTC
CCGCAGTGGTAATCGCTTCAAGGTGGAACACTATGCTGTGGAGCCGCTACCTCTGAATGCGGTCGCCGAGAGGGGTATCG
TTGAAGTCGAGCAGGTTGGTGAAGCAATCCGTCGTGCGGTGAGTCGTTCTGGAACTAAGGCCAAATTTGCCGCTGCTGCG
GTCGCCGGTTCGGCAGTGATCACCAAGTTGATACCGATGCCTGTTGGTCTGGACGAGCAGGATTTGGAAGCCCAGATAGA
AATAGAGGCTACGAATTACATCCCGTACCCTATTGAAGAGGTCAGCCTAGATTTCGAGGTGCTTGGTCCGGTTCCCAACA
ACACGGAGATGGTCCAGGTTTTGCTTGCTGCGTCTCGTTCAGAGAATGTCGAATTGCGCCAATCTGCGTTGGAGTTGGGT
GGGTTGACTGCCAAGGTTATTGACGTGGAGGCTTTAGCGGTTGAGAACGCTTTCTCTCTTATTGCCCAAGAACTGTCGGT
TGGGAGTAATGCATTGGTTGCATTGATCGACATCGGTGCAACGATGTCGACGCTTAATGTGCTGCATAGTGGTCGCAGTT
TGTACACGCGCGAGCAGCTATTTGGTGGTAAGCAGCTTACTGACGAAGTGATGCATCGCTATGGGATGACTTACGAGGAG
GCTGGTCAGGCCAAGCGTCAAGGAGGTTTGCCGCAAAGCTATGAGGTTGAAGTGCTGGGATCATTTAAGGACTCTGTGAT
CCAGCAGATCAGCCGTTTATTACAGTTTTTCTATGCTGGCAGTGAGTACAACCGAGTTGATTGCATCGTGTTGGCGGGAG
GCTGTGCTGTGATTGCGGGTTTGCCGGCTATGGTCGAAGAACGGTTGGGTGTCGTTACCGTTGTGGCTAATCCGCTTGCG
CAGATGACTTTAGGGGCGAAAGTGCAAGCACACACGCTTGCTCAAGATGCACCTGCTTTAATGATTGCTACTGGTCTGGC
TTTGAGGAGTTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

48.295

100

0.483
  comM Acinetobacter nosocomialis M2

48.295

100

0.483
  comM Acinetobacter baylyi ADP1

47.443

100

0.474
  pilM Legionella pneumophila strain ERS1305867

45.326

100

0.455

Multiple sequence alignment