Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPICK_RS02130 Genome accession   NZ_CP009788
Coordinates   473363..473800 (-) Length   145 a.a.
NCBI ID   WP_039740113.1    Uniprot ID   A0A0B5B737
Organism   Geobacter pickeringii strain G13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 468363..478800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPICK_RS02110 (GPICK_02110) - 468664..470022 (-) 1359 WP_039740108.1 MATE family efflux transporter -
  GPICK_RS17985 - 470045..470302 (-) 258 WP_269078670.1 GSU3128 family (seleno)protein -
  GPICK_RS02115 (GPICK_02115) - 470494..470958 (+) 465 WP_039740109.1 MarR family winged helix-turn-helix transcriptional regulator -
  GPICK_RS02120 (GPICK_02120) - 470958..472943 (+) 1986 WP_052263245.1 FUSC family protein -
  GPICK_RS02125 (GPICK_02125) - 472931..473263 (+) 333 WP_039740111.1 DUF1904 family protein -
  GPICK_RS02130 (GPICK_02130) ssb 473363..473800 (-) 438 WP_039740113.1 single-stranded DNA-binding protein Machinery gene
  GPICK_RS02135 (GPICK_02135) - 473943..474644 (+) 702 WP_039740115.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  GPICK_RS02140 (GPICK_02140) - 474646..474825 (+) 180 WP_039740117.1 hypothetical protein -
  GPICK_RS02145 (GPICK_02145) - 474829..475245 (+) 417 WP_039740119.1 tol-pal system YbgF family protein -
  GPICK_RS02150 (GPICK_02150) - 475250..476932 (+) 1683 WP_039740121.1 ribonuclease J -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15939.72 Da        Isoelectric Point: 5.3273

>NTDB_id=132215 GPICK_RS02130 WP_039740113.1 473363..473800(-) (ssb) [Geobacter pickeringii strain G13]
MASLNKVMLIGNLGKDPEVRYTPAGTAVASFSLATSEKFKNKNGEWEERTEWHNVVLWGRQAEVAGEYLSKGKTVYIEGR
LQTRKWQDKDGRDRWSTEVVGEKMQMLSARGEGGGRPAGRGGDAGFSGGPGFDEPAFNPDDDIPF

Nucleotide


Download         Length: 438 bp        

>NTDB_id=132215 GPICK_RS02130 WP_039740113.1 473363..473800(-) (ssb) [Geobacter pickeringii strain G13]
ATGGCCAGCCTCAATAAAGTCATGCTGATCGGCAACCTCGGCAAAGACCCCGAAGTCCGCTACACCCCCGCGGGCACCGC
GGTGGCCAGCTTCTCCCTCGCCACGAGCGAGAAGTTCAAGAACAAGAACGGCGAGTGGGAGGAACGGACCGAGTGGCACA
ACGTGGTCCTCTGGGGACGCCAGGCAGAAGTGGCCGGCGAGTACCTCTCGAAGGGGAAAACGGTCTACATCGAGGGACGG
CTCCAGACCCGCAAATGGCAGGACAAGGATGGCCGCGACCGGTGGAGCACCGAGGTCGTCGGCGAGAAGATGCAGATGCT
CAGCGCCCGCGGCGAAGGGGGCGGACGCCCCGCCGGCCGTGGCGGAGATGCCGGTTTCAGCGGCGGCCCCGGTTTTGACG
AGCCCGCCTTCAACCCGGACGACGACATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B5B737

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.282

100

0.614
  ssb Glaesserella parasuis strain SC1401

56.522

79.31

0.448
  ssb Neisseria gonorrhoeae MS11

55.752

77.931

0.434
  ssb Neisseria meningitidis MC58

55.752

77.931

0.434

Multiple sequence alignment