Detailed information NTG0132151

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: AEI20_RS08035
• Genome accession: NZ_CP012217
• Coordinates: 1509385..1510392 (+)
• Length: 335 a.a.
• NCBI ID: WP_115791422.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain CJ071CC464
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1504385..1515392

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AEI20_RS09775	-	1506021..1506329 (-)	309	WP_269468188.1	hypothetical protein	-
AEI20_RS09780 (AEI20_08035)	-	1506304..1506993 (-)	690	Protein_1559	autotransporter outer membrane beta-barrel domain-containing protein	-
AEI20_RS09785 (AEI20_08040)	-	1507183..1507884 (-)	702	WP_002902430.1	hypothetical protein	-
AEI20_RS09790 (AEI20_08045)	-	1507853..1508320 (-)	468	WP_002860417.1	hypothetical protein	-
AEI20_RS08030 (AEI20_08050)	-	1508884..1509294 (-)	411	WP_002783915.1	hypothetical protein	-
AEI20_RS08035 (AEI20_08055)	ruvB	1509385..1510392 (+)	1008	WP_115791422.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
AEI20_RS08040 (AEI20_08060)	amaA	1510396..1511439 (+)	1044	WP_002859651.1	AI-2E family transporter	-
AEI20_RS08045 (AEI20_08065)	fumC	1511469..1512860 (-)	1392	WP_002859652.1	class II fumarate hydratase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37265.82 Da
• Isoelectric Point: 4.9081

>NTDB_id=132151 AEI20_RS08035 WP_115791422.1 1509385..1510392(+) (ruvB) [Campylobacter jejuni strain CJ071CC464]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIA
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide

• Length: 1008 bp

>NTDB_id=132151 AEI20_RS08035 WP_115791422.1 1509385..1510392(+) (ruvB) [Campylobacter jejuni strain CJ071CC464]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATATCTTTATAGCTGCAGCCAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGAGATATACT
TTTTATCGATGAAATTCATCGCTTAAGTCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGGGCTACAACGCGT
GCAGGTATGCTTAGCAATCCTTTACGTGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
CCTAATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACTCCTAGAATAGCTCTAAGGCTTTTAAAAAGAGTTAGAGATTTTGCCGATGTTAATGATGAAGAGATTATCGCA
GAAAAAAGAGCTAATGAGGCCTTAAATTCTTTAGGAGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCCAAACAAAAACCTATCGGACTTGCAAGTATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTACTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (255-325)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Helicobacter pylori 26695	69.461	99.701	0.693
ruvB	Bacillus subtilis subsp. subtilis str. 168	52.454	97.313	0.51
ruvB	Streptococcus pneumoniae TIGR4	48.632	98.209	0.478
ruvB	Streptococcus pneumoniae R6	48.632	98.209	0.478
ruvB	Streptococcus pneumoniae D39	48.632	98.209	0.478
ruvB	Synechocystis sp. PCC 6803	49.533	95.821	0.475