Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NC16_RS18380 Genome accession   NZ_CP009769
Coordinates   4032757..4033299 (+) Length   180 a.a.
NCBI ID   WP_039283288.1    Uniprot ID   A0A433N4B3
Organism   Pectobacterium brasiliense strain BC1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4027757..4038299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC16_RS18365 (NC16_17655) cas6f 4028066..4028620 (+) 555 WP_039502079.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -
  NC16_RS18370 (NC16_17660) - 4029237..4029656 (-) 420 WP_039502080.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NC16_RS18375 (NC16_17665) uvrA 4029672..4032506 (-) 2835 WP_014916582.1 excinuclease ABC subunit UvrA -
  NC16_RS18380 (NC16_17670) ssb 4032757..4033299 (+) 543 WP_039283288.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NC16_RS18385 (NC16_17675) - 4033455..4034069 (-) 615 WP_039502081.1 hypothetical protein -
  NC16_RS22740 - 4034302..4034451 (+) 150 WP_239458481.1 hypothetical protein -
  NC16_RS18390 (NC16_17680) - 4034454..4035659 (-) 1206 WP_075277800.1 ISL3 family transposase -
  NC16_RS18395 (NC16_17685) - 4035761..4036078 (+) 318 Protein_3536 GNAT family N-acetyltransferase -
  NC16_RS18400 (NC16_17690) - 4036140..4036730 (+) 591 WP_039501413.1 hypothetical protein -
  NC16_RS18405 (NC16_17695) - 4036739..4037776 (-) 1038 WP_039501415.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19115.08 Da        Isoelectric Point: 5.2456

>NTDB_id=132063 NC16_RS18380 WP_039283288.1 4032757..4033299(+) (ssb) [Pectobacterium brasiliense strain BC1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=132063 NC16_RS18380 WP_039283288.1 4032757..4033299(+) (ssb) [Pectobacterium brasiliense strain BC1]
ATGGCCAGCAGAGGCGTTAATAAAGTAATTCTTGTCGGAAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTTGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGCGGTAACGCAGGTGGCGGTCAGCAACAAG
GTGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAACAGCGCCCTGCACAG
AACAGCGCTCCAGCACAAAGCAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A433N4B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461

Multiple sequence alignment