Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FORC6_RS01860 | Genome accession | NZ_CP009765 |
| Coordinates | 389802..390332 (+) | Length | 176 a.a. |
| NCBI ID | WP_005466625.1 | Uniprot ID | Q87LA3 |
| Organism | Vibrio parahaemolyticus strain FORC_006 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 384802..395332
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC6_RS01850 (FORC6_0308) | galU | 387749..388621 (-) | 873 | WP_005466627.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| FORC6_RS01855 (FORC6_0309) | qstR | 388879..389523 (-) | 645 | WP_005480993.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| FORC6_RS01860 (FORC6_0310) | ssb | 389802..390332 (+) | 531 | WP_005466625.1 | single-stranded DNA-binding protein | Machinery gene |
| FORC6_RS01865 (FORC6_0311) | csrD | 390573..392582 (+) | 2010 | WP_025612578.1 | RNase E specificity factor CsrD | - |
| FORC6_RS01870 (FORC6_0312) | - | 392594..394039 (+) | 1446 | WP_005481017.1 | MSHA biogenesis protein MshI | - |
| FORC6_RS01875 (FORC6_0313) | gspM | 394036..394686 (+) | 651 | WP_005497276.1 | type II secretion system protein GspM | - |
| FORC6_RS01880 (FORC6_0314) | - | 394679..395008 (+) | 330 | WP_005481006.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 19563.62 Da Isoelectric Point: 4.9269
>NTDB_id=131989 FORC6_RS01860 WP_005466625.1 389802..390332(+) (ssb) [Vibrio parahaemolyticus strain FORC_006]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=131989 FORC6_RS01860 WP_005466625.1 389802..390332(+) (ssb) [Vibrio parahaemolyticus strain FORC_006]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCTGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCTGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
81.006 |
100 |
0.824 |
| ssb | Glaesserella parasuis strain SC1401 |
57.143 |
100 |
0.614 |
| ssb | Neisseria meningitidis MC58 |
48.023 |
100 |
0.483 |
| ssb | Neisseria gonorrhoeae MS11 |
48.023 |
100 |
0.483 |