Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   NG74_RS11625 Genome accession   NZ_CP009679
Coordinates   2462192..2462506 (-) Length   104 a.a.
NCBI ID   WP_021494312.1    Uniprot ID   -
Organism   Bacillus velezensis strain JS25R     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2457192..2467506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG74_RS11580 (NG74_02399) sinI 2457873..2458046 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  NG74_RS11585 (NG74_02400) sinR 2458080..2458415 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  NG74_RS11590 (NG74_02401) tasA 2458463..2459248 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  NG74_RS11595 (NG74_02402) sipW 2459313..2459897 (-) 585 WP_022552967.1 signal peptidase I SipW -
  NG74_RS11600 (NG74_02403) tapA 2459869..2460540 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  NG74_RS11605 (NG74_02404) - 2460799..2461128 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  NG74_RS11610 (NG74_02405) - 2461169..2461348 (-) 180 WP_022552966.1 YqzE family protein -
  NG74_RS11615 (NG74_02406) comGG 2461405..2461782 (-) 378 WP_022552965.1 competence type IV pilus minor pilin ComGG Machinery gene
  NG74_RS11620 (NG74_02407) comGF 2461783..2462178 (-) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  NG74_RS11625 (NG74_02408) comGE 2462192..2462506 (-) 315 WP_021494312.1 competence type IV pilus minor pilin ComGE Machinery gene
  NG74_RS11630 (NG74_02409) comGD 2462490..2462927 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  NG74_RS11635 (NG74_02410) comGC 2462917..2463225 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene
  NG74_RS11640 (NG74_02411) comGB 2463230..2464267 (-) 1038 WP_022552962.1 competence type IV pilus assembly protein ComGB Machinery gene
  NG74_RS11645 (NG74_02412) comGA 2464254..2465324 (-) 1071 WP_014418378.1 competence type IV pilus ATPase ComGA Machinery gene
  NG74_RS11650 (NG74_02413) - 2465517..2466467 (-) 951 WP_014418379.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11803.81 Da        Isoelectric Point: 5.8181

>NTDB_id=131081 NG74_RS11625 WP_021494312.1 2462192..2462506(-) (comGE) [Bacillus velezensis strain JS25R]
MLNGNKGFSTIETLSAMAIWLFLMTSIIPVWTGMMTDGLKIEDRQEAYQLLQKHISTYMMTGKKPPSPGVKWKEDGEYYK
VCAADPGEKEMCLSILKTDWLYAS

Nucleotide


Download         Length: 315 bp        

>NTDB_id=131081 NG74_RS11625 WP_021494312.1 2462192..2462506(-) (comGE) [Bacillus velezensis strain JS25R]
ATGCTAAACGGAAATAAGGGGTTCTCTACTATTGAAACGCTATCAGCAATGGCCATTTGGCTGTTCCTTATGACGTCTAT
CATTCCGGTCTGGACGGGCATGATGACAGATGGCCTGAAAATAGAAGATCGCCAGGAAGCGTACCAGCTTCTTCAGAAAC
ATATCAGCACTTATATGATGACCGGAAAAAAGCCGCCGTCTCCCGGTGTGAAGTGGAAGGAGGATGGTGAGTATTACAAA
GTGTGTGCGGCTGACCCCGGCGAAAAAGAAATGTGCCTCAGCATTCTCAAAACAGACTGGCTTTACGCTTCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Bacillus subtilis subsp. subtilis str. 168

44.348

100

0.49

Multiple sequence alignment