Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ADJ52_RS03415 Genome accession   NZ_CP012066
Coordinates   759389..759814 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain F9676     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 754389..764814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADJ52_RS03395 (ADJ52_03395) ileS 754546..757377 (+) 2832 WP_004352756.1 isoleucine--tRNA ligase -
  ADJ52_RS03400 (ADJ52_03400) lspA 757370..757879 (+) 510 WP_003110420.1 signal peptidase II -
  ADJ52_RS03405 (ADJ52_03405) fkpB 757872..758312 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  ADJ52_RS03410 (ADJ52_03410) ispH 758398..759342 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ADJ52_RS03415 (ADJ52_03415) comF 759389..759814 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  ADJ52_RS03420 (ADJ52_03420) pilY2 759811..760158 (-) 348 WP_012614546.1 type 4a fimbrial biogenesis protein PilY2 -
  ADJ52_RS03425 (ADJ52_03425) pilY1 760160..763651 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  ADJ52_RS03430 (ADJ52_03430) pilX 763663..764250 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=131083 ADJ52_RS03415 WP_003094721.1 759389..759814(-) (comF) [Pseudomonas aeruginosa strain F9676]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=131083 ADJ52_RS03415 WP_003094721.1 759389..759814(-) (comF) [Pseudomonas aeruginosa strain F9676]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383

Multiple sequence alignment