Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NG74_RS11585 Genome accession   NZ_CP009679
Coordinates   2458080..2458415 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain JS25R     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2453080..2463415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG74_RS11565 (NG74_02395) gcvT 2453686..2454786 (-) 1101 WP_017418134.1 glycine cleavage system aminomethyltransferase GcvT -
  NG74_RS11570 (NG74_02397) - 2455210..2456880 (+) 1671 WP_038461530.1 DEAD/DEAH box helicase -
  NG74_RS11575 (NG74_02398) - 2456902..2457696 (+) 795 WP_014418368.1 YqhG family protein -
  NG74_RS11580 (NG74_02399) sinI 2457873..2458046 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  NG74_RS11585 (NG74_02400) sinR 2458080..2458415 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  NG74_RS11590 (NG74_02401) tasA 2458463..2459248 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  NG74_RS11595 (NG74_02402) sipW 2459313..2459897 (-) 585 WP_022552967.1 signal peptidase I SipW -
  NG74_RS11600 (NG74_02403) tapA 2459869..2460540 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  NG74_RS11605 (NG74_02404) - 2460799..2461128 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  NG74_RS11610 (NG74_02405) - 2461169..2461348 (-) 180 WP_022552966.1 YqzE family protein -
  NG74_RS11615 (NG74_02406) comGG 2461405..2461782 (-) 378 WP_022552965.1 competence type IV pilus minor pilin ComGG Machinery gene
  NG74_RS11620 (NG74_02407) comGF 2461783..2462178 (-) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  NG74_RS11625 (NG74_02408) comGE 2462192..2462506 (-) 315 WP_021494312.1 competence type IV pilus minor pilin ComGE Machinery gene
  NG74_RS11630 (NG74_02409) comGD 2462490..2462927 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  NG74_RS11635 (NG74_02410) comGC 2462917..2463225 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=131079 NG74_RS11585 WP_003153104.1 2458080..2458415(+) (sinR) [Bacillus velezensis strain JS25R]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=131079 NG74_RS11585 WP_003153104.1 2458080..2458415(+) (sinR) [Bacillus velezensis strain JS25R]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment