Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KX01_RS02660 Genome accession   NZ_CP009654
Coordinates   518223..518687 (+) Length   154 a.a.
NCBI ID   WP_071663519.1    Uniprot ID   A0A1J0KS57
Organism   Francisella frigiditurris strain CA97-1460     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 513223..523687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX01_RS02640 (KX01_536) - 514021..514188 (-) 168 WP_071663515.1 zinc-finger domain-containing protein -
  KX01_RS02645 (KX01_537) - 514365..516164 (+) 1800 WP_071663516.1 ABC transporter permease subunit -
  KX01_RS02650 (KX01_538) - 516187..517503 (+) 1317 WP_071663517.1 AAA-associated domain-containing protein -
  KX01_RS02655 (KX01_539) - 517505..518098 (-) 594 WP_071663518.1 hypothetical protein -
  KX01_RS02660 (KX01_540) ssb 518223..518687 (+) 465 WP_071663519.1 single-stranded DNA-binding protein Machinery gene
  KX01_RS02665 (KX01_541) - 518729..519886 (+) 1158 WP_071663520.1 acetate/propionate family kinase -
  KX01_RS02670 (KX01_542) pta 520055..522028 (+) 1974 WP_408606611.1 phosphate acetyltransferase -
  KX01_RS02675 (KX01_543) - 522046..522585 (-) 540 WP_071663522.1 hypothetical protein -
  KX01_RS02680 (KX01_544) - 522677..523222 (-) 546 WP_071663523.1 L-threonylcarbamoyladenylate synthase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16726.29 Da        Isoelectric Point: 5.8431

>NTDB_id=131028 KX01_RS02660 WP_071663519.1 518223..518687(+) (ssb) [Francisella frigiditurris strain CA97-1460]
MAKGTVNKVILLGRLGTNPEVRVTQNGTSVATLSLATNDGIGDNITTEWHRVVVFGKSAEAIQKYATKGSQLFVEGRLRT
NKWQDKNGNPQYTTEVVASNFQFVGGGNSSGGDSGFQSNQPAQNNNFNQQRPQQNNVPDFAEINSTSFDDDIPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=131028 KX01_RS02660 WP_071663519.1 518223..518687(+) (ssb) [Francisella frigiditurris strain CA97-1460]
ATGGCTAAAGGAACAGTTAATAAGGTTATATTGTTAGGTAGACTTGGTACAAATCCTGAGGTTAGAGTTACTCAAAATGG
AACTTCAGTTGCTACATTAAGTTTGGCAACTAATGATGGAATTGGAGATAATATAACTACTGAGTGGCATAGAGTAGTTG
TTTTTGGTAAGTCTGCAGAGGCAATTCAAAAATATGCTACTAAAGGGTCTCAACTCTTCGTAGAAGGTAGGCTTAGAACC
AATAAATGGCAAGATAAGAATGGAAATCCACAATATACAACAGAAGTTGTTGCTAGTAATTTTCAATTTGTAGGCGGTGG
TAATTCATCTGGTGGGGACTCTGGTTTCCAAAGTAATCAACCCGCGCAAAATAATAATTTTAACCAGCAACGTCCTCAAC
AGAATAATGTACCAGATTTTGCAGAAATAAATTCTACTAGTTTTGATGATGACATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J0KS57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

43.258

100

0.5
  ssb Vibrio cholerae strain A1552

42.135

100

0.487
  ssb Neisseria gonorrhoeae MS11

36

100

0.409
  ssb Neisseria meningitidis MC58

34.857

100

0.396

Multiple sequence alignment