Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BG07_RS13815 Genome accession   NZ_CP009651
Coordinates   2329075..2329359 (+) Length   94 a.a.
NCBI ID   WP_003194210.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain BTZ     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2324075..2334359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG07_RS13800 (BG07_2304) rnmV 2324943..2325500 (-) 558 WP_018767333.1 ribonuclease M5 -
  BG07_RS13805 (BG07_2305) - 2325784..2326551 (-) 768 WP_018783062.1 TatD family hydrolase -
  BG07_RS13810 (BG07_2306) metG 2326729..2328711 (-) 1983 WP_018783061.1 methionine--tRNA ligase -
  BG07_RS13815 (BG07_2307) abrB 2329075..2329359 (+) 285 WP_003194210.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BG07_RS13820 (BG07_2308) rsmI 2329380..2330255 (-) 876 WP_018783060.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BG07_RS13825 (BG07_2309) - 2330224..2330514 (-) 291 WP_018783059.1 GIY-YIG nuclease family protein -
  BG07_RS13830 (BG07_2310) - 2330501..2331241 (-) 741 WP_006093070.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BG07_RS13835 (BG07_2311) yabA 2331362..2331712 (-) 351 WP_016116893.1 DNA replication initiation control protein YabA -
  BG07_RS13840 (BG07_2312) - 2331727..2332554 (-) 828 WP_003194202.1 stage 0 sporulation family protein -
  BG07_RS13845 (BG07_2313) holB 2332560..2333543 (-) 984 WP_018783058.1 DNA polymerase III subunit delta' -
  BG07_RS13850 (BG07_2314) tmk 2333579..2334205 (-) 627 WP_003194196.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10500.25 Da        Isoelectric Point: 5.1969

>NTDB_id=130984 BG07_RS13815 WP_003194210.1 2329075..2329359(+) (abrB) [Bacillus pseudomycoides strain BTZ]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQQYIQAVK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=130984 BG07_RS13815 WP_003194210.1 2329075..2329359(+) (abrB) [Bacillus pseudomycoides strain BTZ]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGCCGTGTTGTAATTCCGATTGAATTACGTCGTACATTAGG
TATTGCTGAAAAGGATGCTCTTGAAATTTACGTTGATGACGAAAAAATCATCCTAAAAAAATATAAGCCTAACATGACTT
GCCAAGTAACTGGTGAAGTGTCTGATGGTAACCTTTCTTTAGCCGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAA
CAGATCTTAAACGAACTTCAACAATATATTCAAGCAGTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

86.17

100

0.862

Multiple sequence alignment