Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PKOR_RS04300 | Genome accession | NZ_CP009621 |
| Coordinates | 1051652..1052128 (+) | Length | 158 a.a. |
| NCBI ID | WP_046309328.1 | Uniprot ID | A0A0E3UW87 |
| Organism | Pontibacter korlensis strain X14-1T | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1046652..1057128
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PKOR_RS04280 (PKOR_04275) | - | 1047080..1048678 (-) | 1599 | WP_046309321.1 | Rne/Rng family ribonuclease | - |
| PKOR_RS04285 (PKOR_04280) | - | 1048892..1049758 (-) | 867 | WP_046309323.1 | tetratricopeptide repeat protein | - |
| PKOR_RS04290 (PKOR_04285) | - | 1049818..1050123 (-) | 306 | WP_046309325.1 | HU family DNA-binding protein | - |
| PKOR_RS04295 (PKOR_04290) | mutY | 1050449..1051540 (+) | 1092 | WP_046309326.1 | A/G-specific adenine glycosylase | - |
| PKOR_RS04300 (PKOR_04295) | ssb | 1051652..1052128 (+) | 477 | WP_046309328.1 | single-stranded DNA-binding protein | Machinery gene |
| PKOR_RS04305 (PKOR_04300) | gldE | 1052218..1053525 (+) | 1308 | WP_046309331.1 | gliding motility-associated protein GldE | - |
| PKOR_RS04310 (PKOR_04305) | gldD | 1053539..1054102 (+) | 564 | WP_046309332.1 | gliding motility lipoprotein GldD | - |
| PKOR_RS04315 (PKOR_04310) | recG | 1054230..1056329 (+) | 2100 | WP_046314075.1 | ATP-dependent DNA helicase RecG | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 16917.52 Da Isoelectric Point: 5.7815
>NTDB_id=130802 PKOR_RS04300 WP_046309328.1 1051652..1052128(+) (ssb) [Pontibacter korlensis strain X14-1T]
MASVNKAILVGNLGKDPEVRHLEGGVAVARFPIATSETFKDKNGQRQERTEWHNIVVWRGLAEVAEKYLRKGNSVYIEGR
IRTNSYQDKDGVQRYSTEIVADNMTMLGGRSDNGGSGDYQGQGSTAASSGNYSGGATANKGGSPAGGFQSDEPDDLPF
MASVNKAILVGNLGKDPEVRHLEGGVAVARFPIATSETFKDKNGQRQERTEWHNIVVWRGLAEVAEKYLRKGNSVYIEGR
IRTNSYQDKDGVQRYSTEIVADNMTMLGGRSDNGGSGDYQGQGSTAASSGNYSGGATANKGGSPAGGFQSDEPDDLPF
Nucleotide
Download Length: 477 bp
>NTDB_id=130802 PKOR_RS04300 WP_046309328.1 1051652..1052128(+) (ssb) [Pontibacter korlensis strain X14-1T]
ATGGCAAGTGTAAACAAAGCAATTCTGGTCGGAAACTTAGGTAAAGACCCAGAAGTACGTCACCTGGAAGGTGGTGTGGC
AGTAGCTCGATTCCCAATCGCTACTTCCGAAACTTTCAAAGACAAAAACGGACAGCGCCAGGAGCGCACCGAGTGGCATA
ACATTGTAGTATGGAGAGGCTTGGCAGAGGTAGCTGAAAAGTACCTGCGCAAAGGCAATTCAGTATACATTGAAGGACGT
ATCCGTACGAACAGTTACCAGGATAAAGATGGTGTGCAGCGCTATAGCACTGAGATAGTGGCAGATAATATGACCATGCT
TGGTGGCCGTAGCGATAACGGCGGAAGCGGCGACTACCAAGGCCAAGGATCCACTGCTGCCAGCAGCGGAAACTATAGCG
GTGGCGCGACGGCTAACAAAGGCGGCAGCCCAGCCGGAGGATTCCAGAGCGACGAACCGGACGACCTGCCCTTCTAA
ATGGCAAGTGTAAACAAAGCAATTCTGGTCGGAAACTTAGGTAAAGACCCAGAAGTACGTCACCTGGAAGGTGGTGTGGC
AGTAGCTCGATTCCCAATCGCTACTTCCGAAACTTTCAAAGACAAAAACGGACAGCGCCAGGAGCGCACCGAGTGGCATA
ACATTGTAGTATGGAGAGGCTTGGCAGAGGTAGCTGAAAAGTACCTGCGCAAAGGCAATTCAGTATACATTGAAGGACGT
ATCCGTACGAACAGTTACCAGGATAAAGATGGTGTGCAGCGCTATAGCACTGAGATAGTGGCAGATAATATGACCATGCT
TGGTGGCCGTAGCGATAACGGCGGAAGCGGCGACTACCAAGGCCAAGGATCCACTGCTGCCAGCAGCGGAAACTATAGCG
GTGGCGCGACGGCTAACAAAGGCGGCAGCCCAGCCGGAGGATTCCAGAGCGACGAACCGGACGACCTGCCCTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
45.506 |
100 |
0.513 |
| ssb | Neisseria gonorrhoeae MS11 |
46.821 |
100 |
0.513 |
| ssb | Neisseria meningitidis MC58 |
45.665 |
100 |
0.5 |
| ssb | Glaesserella parasuis strain SC1401 |
42.222 |
100 |
0.481 |