Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JL53_RS00405 Genome accession   NZ_CP009576
Coordinates   90392..90934 (+) Length   180 a.a.
NCBI ID   WP_038406365.1    Uniprot ID   -
Organism   Listeria ivanovii subsp. londoniensis strain WSLC 30151     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 85392..95934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL53_RS00380 (JL53_00380) aguA 85783..86892 (+) 1110 WP_003718118.1 agmatine deiminase -
  JL53_RS00385 (JL53_00385) - 86910..87689 (+) 780 WP_003718119.1 MurR/RpiR family transcriptional regulator -
  JL53_RS00390 (JL53_00390) - 87793..88452 (+) 660 WP_003721665.1 DedA family protein -
  JL53_RS00395 (JL53_00395) arcA 88530..89759 (+) 1230 WP_077916382.1 arginine deiminase -
  JL53_RS00400 (JL53_00400) rpsF 90042..90335 (+) 294 WP_003718123.1 30S ribosomal protein S6 -
  JL53_RS00405 (JL53_00405) ssbA 90392..90934 (+) 543 WP_038406365.1 single-stranded DNA-binding protein Machinery gene
  JL53_RS00410 (JL53_00410) rpsR 90978..91217 (+) 240 WP_003721669.1 30S ribosomal protein S18 -
  JL53_RS00415 (JL53_00415) - 91371..91979 (+) 609 WP_038406367.1 PepSY domain-containing protein -
  JL53_RS00420 (JL53_00420) - 92234..92848 (+) 615 WP_038406368.1 accessory gene regulator ArgB-like protein -
  JL53_RS00425 (JL53_00425) - 92832..92993 (+) 162 WP_003718129.1 cyclic lactone autoinducer peptide -
  JL53_RS00430 (JL53_00430) - 93089..94384 (+) 1296 WP_038406370.1 sensor histidine kinase -
  JL53_RS00435 (JL53_00435) - 94403..95131 (+) 729 WP_003718132.1 LytR/AlgR family response regulator transcription factor -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19665.33 Da        Isoelectric Point: 4.7306

>NTDB_id=130337 JL53_RS00405 WP_038406365.1 90392..90934(+) (ssbA) [Listeria ivanovii subsp. londoniensis strain WSLC 30151]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSSGGGGNNYQGGNTNNNSNYNNGGNNFGQAPTNNGGFAQDQQQSQNQNYQSTN
NDPFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=130337 JL53_RS00405 WP_038406365.1 90392..90934(+) (ssbA) [Listeria ivanovii subsp. londoniensis strain WSLC 30151]
ATGATGAATCGTGTTGTACTCGTAGGACGCTTAACTAAAGATCCTGAATTACGTTATACTCCAGCTGGCGTGGCTGTTGC
GACTTTTACACTTGCTGTAAATCGTACGTTCACTAACCAACAGGGGGAACGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCAGCAGAGAACGTTGCTAATTTCCTAAAAAAGGGAAGCATGGCAGGTGTTGATGGCCGCGTTCAAACTCGT
AATTACGAGGGAAACGACGGTAAACGTGTTTATGTGACAGAAATTGTGGCTGAGAGTGTTCAATTCCTTGAACCGCGTAA
TTCGAGTGGCGGTGGCGGAAATAACTATCAAGGTGGCAATACTAATAACAACAGTAATTATAATAACGGTGGAAATAATT
TCGGACAAGCACCTACTAATAACGGTGGATTCGCACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAAC
AATGATCCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.556

100

0.656
  ssb Latilactobacillus sakei subsp. sakei 23K

55.556

100

0.556
  ssb Glaesserella parasuis strain SC1401

36.022

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

58.889

0.361

Multiple sequence alignment