Detailed information NTG0129904

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LT40_RS19510
• Genome accession: NZ_CP009533
• Coordinates: 4404379..4405725 (-)
• Length: 448 a.a.
• NCBI ID: WP_043192820.1
• Uniprot ID: -
• Organism: Pseudomonas rhizosphaerae strain DSM 16299
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4399379..4410725

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LT40_RS19495 (LT40_19815)	-	4399454..4402537 (+)	3084	WP_043192817.1	pilus assembly protein	-
LT40_RS19500 (LT40_19820)	-	4402546..4402941 (+)	396	WP_043192818.1	type IV pilin protein	-
LT40_RS19505 (LT40_19825)	thiO	4402962..4404062 (+)	1101	WP_043192819.1	glycine oxidase ThiO	-
LT40_RS19510 (LT40_19830)	pilR	4404379..4405725 (-)	1347	WP_043192820.1	sigma-54-dependent transcriptional regulator	Regulator
LT40_RS19515 (LT40_19835)	pilS	4405728..4407323 (-)	1596	WP_043192821.1	sensor histidine kinase	Regulator
LT40_RS19520 (LT40_19840)	-	4407313..4407546 (-)	234	WP_043192822.1	PP0621 family protein	-
LT40_RS19525 (LT40_19845)	-	4407920..4408942 (-)	1023	WP_043192824.1	outer membrane protein assembly factor BamD	-
LT40_RS19530 (LT40_19850)	rluD	4409093..4410055 (+)	963	WP_043192826.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49927.46 Da
• Isoelectric Point: 5.9025

>NTDB_id=129904 LT40_RS19510 WP_043192820.1 4404379..4405725(-) (pilR) [Pseudomonas rhizosphaerae strain DSM 16299]
MSARQKILIVDDEPDIRELLEITLGRMKLETRSARDVTEAREWLGRESFDLCLTDMRLPDGTGLELVQFIQQRYPQLPVA
MITAFGSLDTAINALKAGAFDFLTKPVDLPRLRELVGTALRMPAPAPAGKEPSIDQRLLGDSPPMLALRKQIGRLARSQA
PVYISGESGSGKELVARLIHEQGPRADRPFIPVNCGAIPAELMESEFFGHRKGSFTGATEDKPGLFQAAHGGTLFLDEVA
DLPLTMQVKLLRAIQEKAVRAVGGQTENVVDVRILCATHKDLAAEVAAQRFRQDLYYRLNVIELRVPCLRERREDIPLLA
SSMLTRLAQGSGLPPAQLTPAALETLKGYRFPGNVRELENMLERAYTLCEDDRIEASDLRLSETAASVDTGEPSLARIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLNMSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=129904 LT40_RS19510 WP_043192820.1 4404379..4405725(-) (pilR) [Pseudomonas rhizosphaerae strain DSM 16299]
ATGAGCGCCAGGCAAAAAATTCTGATCGTGGATGACGAGCCGGACATTCGCGAACTGCTGGAAATCACCCTCGGCCGCAT
GAAGCTGGAAACCCGCAGCGCGCGCGATGTCACCGAGGCCCGTGAATGGCTGGGCCGCGAATCGTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCAGACGGTACGGGCCTTGAGCTGGTGCAGTTCATCCAGCAGCGCTATCCGCAACTGCCGGTGGCC
ATGATCACTGCCTTCGGCAGCCTGGATACCGCCATCAATGCACTCAAGGCTGGCGCCTTCGATTTCCTCACCAAACCGGT
CGACCTGCCGCGCCTGCGTGAGTTGGTGGGCACCGCGCTGCGCATGCCGGCGCCCGCCCCTGCCGGCAAGGAACCGAGCA
TCGACCAGCGCCTGCTCGGGGATTCGCCGCCCATGCTGGCTCTGCGCAAACAGATCGGCCGTCTGGCCCGCAGCCAGGCC
CCGGTGTACATCAGCGGTGAGTCGGGCAGCGGCAAGGAACTGGTCGCCCGGCTGATTCACGAGCAAGGCCCGCGGGCCGA
TCGACCGTTCATTCCAGTGAACTGCGGGGCCATCCCGGCCGAGCTGATGGAGAGCGAATTCTTCGGCCATCGCAAGGGCA
GCTTTACCGGTGCCACCGAAGACAAGCCGGGACTGTTTCAGGCCGCCCATGGTGGCACGCTGTTTCTCGACGAGGTGGCC
GACCTGCCGCTGACCATGCAGGTGAAGTTGCTGCGCGCCATACAGGAAAAAGCTGTGCGGGCAGTGGGCGGGCAGACCGA
GAACGTGGTCGATGTGCGCATTCTTTGCGCGACCCACAAGGACCTGGCGGCCGAAGTGGCGGCCCAGCGTTTTCGCCAGG
ACCTTTACTACCGTTTGAATGTGATCGAGCTGCGGGTGCCTTGCCTGCGCGAGCGGCGTGAAGACATTCCGCTGCTGGCC
AGCAGCATGCTGACGCGCCTGGCGCAAGGCAGCGGCCTGCCACCGGCGCAATTGACCCCAGCCGCTCTGGAAACCCTCAA
GGGCTACCGCTTTCCCGGCAACGTGCGTGAACTGGAGAACATGCTCGAACGGGCCTACACCTTGTGTGAGGACGACCGCA
TCGAAGCGAGCGACCTGCGCCTGAGCGAAACGGCGGCCAGCGTGGACACCGGTGAGCCCAGCCTGGCCCGGATCGACAAC
CTGGAAGATTACCTGGAAAGCGTGGAGCGCAAGCTCATCCTGCAAGCCCTGGAAGAAACCCGCTGGAACCGCACGGCAGC
GGCGCAGCGGTTGAATATGTCGTTCCGTTCGATGCGCTACCGCCTCAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	80.493	99.554	0.801
pilR	Acinetobacter baumannii strain A118	49.891	100	0.511
luxO	Vibrio cholerae strain A1552	37.923	98.884	0.375